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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182320 (37 seq.)
>C171127294
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
540144
540220
+
Arg
TCG
-
¡û
>C171127330
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
193629
193553
-
Arg
TCG
-
¡û
>C171127349
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
648136
648212
+
Arg
TCG
-
¡û
>C171127383
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
240444
240368
-
Arg
TCG
-
¡û
>C171127403
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
712351
712275
-
Arg
TCG
-
¡û
>C026075
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
621429
621353
-
Arg
TCG
[Ensembl]
¡û
>w025439
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
438958
439036
+
Arg
TCG
[ENA]
¡û
>w025413
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
249125
249047
-
Arg
TCG
[ENA]
¡û
>w025388
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
52582
52504
-
Arg
TCG
[ENA]
¡û
>w025358
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
281731
281809
+
Arg
TCG
[ENA]
¡û
>w024343
AAYQ01000011
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
33497
33419
-
Arg
TCG
[ENA]
¡û
>w024313
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
222809
222731
-
Arg
TCG
[ENA]
¡û
>w024285
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
146677
146755
+
Arg
TCG
[ENA]
¡û
>w024258
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
16335
16257
-
Arg
TCG
[ENA]
¡û
>w024229
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
168249
168171
-
Arg
TCG
[ENA]
¡û
>WENV180225659
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
169385
169461
+
Arg
TCG
[ENA]
¢þ
>WENV180554108
OCJM01000119
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
1037
1113
+
Arg
TCG
[ENA]
¢þ
>WENV180822739
ODJV01000047
[ODJV] human metagenome; G_DNA_Posterior fornix
1550
1626
+
Arg
TCG
[ENA]
¢þ
>W08002228
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
198388
198315
-
Arg
TCG
[ENA]
¡û
>W08002263
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
194180
194107
-
Arg
TCG
[ENA]
¡û
>W08002281
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
618756
618832
+
Arg
TCG
[ENA]
¡û
>W08002308
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
515432
515508
+
Arg
TCG
[ENA]
¡û
>W08002812
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
607459
607535
+
Arg
TCG
[ENA]
¡û
>C08011100
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
621415
621342
-
Arg
TCG
[Ensembl]
¡û
>C191003520
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
444392
444316
-
Arg
TCG
-
¡û
>C09110785
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
700317
700241
-
Arg
TCG
[Ensembl]
¡û
>W1911824672
QZWO01000106
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
255
331
+
Arg
TCG
[ENA]
¡û
>W1810735673
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
36772
36696
-
Arg
TCG
[ENA]
¡û
>W1810735690
QOKU01000119
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6420
6344
-
Arg
TCG
[ENA]
¡û
>W1810757241
QPHI01000084
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
6304
6228
-
Arg
TCG
[ENA]
¡û
>W1810757267
QPHJ01000090
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
6112
6036
-
Arg
TCG
[ENA]
¡û
>W1810757292
QPHK01000132
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
6598
6522
-
Arg
TCG
[ENA]
¡û
>C151002383
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
301466
301542
+
Arg
TCG
[Ensembl]
¡û
>W121060656
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
73571
73495
-
Arg
TCG
[ENA]
¡û
>W121060687
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
99568
99492
-
Arg
TCG
[ENA]
¡û
>W121060711
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
95692
95616
-
Arg
TCG
[ENA]
¡û
>W121060738
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
95753
95677
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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