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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182321 (37 seq.)
>C171127293
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
539986
540062
+
Arg
TCT
-
¡û
>C171127329
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
193782
193706
-
Arg
TCT
-
¡û
>C171127348
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
647983
648059
+
Arg
TCT
-
¡û
>C171127382
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
240597
240521
-
Arg
TCT
-
¡û
>C171127402
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
712504
712428
-
Arg
TCT
-
¡û
>C026074
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
621583
621507
-
Arg
TCT
[Ensembl]
¡û
>w025438
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
438800
438878
+
Arg
TCT
[ENA]
¡û
>w025412
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
249283
249205
-
Arg
TCT
[ENA]
¡û
>w025387
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
52740
52662
-
Arg
TCT
[ENA]
¡û
>w025357
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
281574
281652
+
Arg
TCT
[ENA]
¡û
>w024342
AAYQ01000011
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
33655
33577
-
Arg
TCT
[ENA]
¡û
>w024312
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
222967
222889
-
Arg
TCT
[ENA]
¡û
>w024284
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
146519
146597
+
Arg
TCT
[ENA]
¡û
>w024257
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
16493
16415
-
Arg
TCT
[ENA]
¡û
>w024228
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
168402
168324
-
Arg
TCT
[ENA]
¡û
>WENV180225658
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
169229
169305
+
Arg
TCT
[ENA]
¢þ
>WENV180554107
OCJM01000119
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
881
957
+
Arg
TCT
[ENA]
¢þ
>WENV180822738
ODJV01000047
[ODJV] human metagenome; G_DNA_Posterior fornix
1398
1474
+
Arg
TCT
[ENA]
¢þ
>W08002227
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
198546
198473
-
Arg
TCT
[ENA]
¡û
>W08002262
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
194334
194261
-
Arg
TCT
[ENA]
¡û
>W08002280
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
618598
618674
+
Arg
TCT
[ENA]
¡û
>W08002307
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
515274
515350
+
Arg
TCT
[ENA]
¡û
>W08002811
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
607301
607377
+
Arg
TCT
[ENA]
¡û
>C08011099
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
621568
621495
-
Arg
TCT
[Ensembl]
¡û
>W141455543
JFDP01000043
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
17514
17590
+
Arg
TCT
[ENA]
¡û
>C191003519
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
444547
444471
-
Arg
TCT
-
¡û
>W141779617
JONZ01000005
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
10235
10159
-
Arg
TCT
[ENA]
¡û
>C09110784
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
700475
700399
-
Arg
TCT
[Ensembl]
¡û
>W1810735672
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
36930
36854
-
Arg
TCT
[ENA]
¡û
>W1810757240
QPHI01000084
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
6458
6382
-
Arg
TCT
[ENA]
¡û
>W1810757266
QPHJ01000090
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
6266
6190
-
Arg
TCT
[ENA]
¡û
>C151002382
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
301306
301382
+
Arg
TCT
[Ensembl]
¡û
>C161022164
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
246941
247017
+
Arg
TCT
-
¡û
>W121060655
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
73729
73653
-
Arg
TCT
[ENA]
¡û
>W121060686
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
99726
99650
-
Arg
TCT
[ENA]
¡û
>W121060710
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
95850
95774
-
Arg
TCT
[ENA]
¡û
>W121060737
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
95911
95835
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK