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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182325 (73 seq.)
>W131225357
AUDM01000040
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
1544
1620
+
Ile
GAT
[ENA]
¡û
>W131237940
AUSH01000072
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
2099
2173
+
Ile
GAT
[ENA]
¡û
>W131237942
AUSH01000074
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
55882
55808
-
Ile
GAT
[ENA]
¡û
>w023510
AAXX01000003
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
129576
129652
+
Ile
GAT
[ENA]
¡û
>w023486
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
678690
678617
-
Ile
GAT
[ENA]
¡û
>w023484
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
705052
704979
-
Ile
GAT
[ENA]
¡û
>WENV016762
AACY020469417
Marine microbial communities from Global Ocean Sampling (GOS)
2229
2305
+
Ile
GAT
[ENA]
>WENV180208894
OBAJ01083764
[OBAJ] marine metagenome; Coastal water
9
83
+
Ile
GAT
[ENA]
¢þ
>WENV180345065
OBLM01014099
[OBLM] soil metagenome; soil
348
274
-
Ile
GAT
[ENA]
¢þ
>WENV180391369
OBPM01108237
[OBPM] marine metagenome; ENVO:00002010
233
159
-
Ile
GAT
[ENA]
¢þ
>WENV180594174
OCOY01079018
[OCOY] marine metagenome; ENVO:00002010
75
1
-
Ile
GAT
[ENA]
¢þ
>W141093458
AVBI01000023
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
1675
1751
+
Ile
GAT
[ENA]
¡û
>W141094607
AVCS01000031
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
3220
3144
-
Ile
GAT
[ENA]
¡û
>W141096652
AVFO01000001
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
3491
3415
-
Ile
GAT
[ENA]
¡û
>W141097144
AVGG01000026
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
1738
1814
+
Ile
GAT
[ENA]
¡û
>WENV181169644
OEIV010006237
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
931
1005
+
Ile
GAT
[ENA]
¢þ
>WENV181368033
OFQG01000003
[OFQG] freshwater metagenome; Freshwater Lake
3625
3551
-
Ile
GAT
[ENA]
¢þ
>WENV181371997
OFQW01007018
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1334
1260
-
Ile
GAT
[ENA]
¢þ
>WENV181379460
OFRD01001820
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2355
2281
-
Ile
GAT
[ENA]
¢þ
>WENV181384532
OFRI01002269
[OFRI] wastewater metagenome; Exp Tend VB 90WW
3663
3589
-
Ile
GAT
[ENA]
¢þ
>WENV181400196
OFSF01002265
[OFSF] wastewater metagenome; Exp Tend VB 100WW
3491
3417
-
Ile
GAT
[ENA]
¢þ
>WENV181412805
OGCK01008991
[OGCK] hot springs metagenome; hot spring sediment
473
547
+
Ile
GAT
[ENA]
¢þ
>WENV182554564
OJCV01001493
[OJCV] seawater metagenome; Sea water
276
202
-
Ile
GAT
[ENA]
¢þ
>WENV182576955
OJGB01002465
[OJGB] seawater metagenome; Sea water
275
201
-
Ile
GAT
[ENA]
¢þ
>WENV182581731
OJGY01000645
[OJGY] seawater metagenome; Sea water
305
231
-
Ile
GAT
[ENA]
¢þ
>WENV182588205
OJHP01000353
[OJHP] seawater metagenome; Sea water
334
260
-
Ile
GAT
[ENA]
¢þ
>WENV183711247
PDWI01064128
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
524
598
+
Ile
GAT
[ENA]
¢þ
>WENV183720382
PDWJ01033125
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2393
2319
-
Ile
GAT
[ENA]
¢þ
>WENV002031
AACY020057074
Marine microbial communities from Global Ocean Sampling (GOS)
1990
2066
+
Ile
GAT
[ENA]
>WENV170609625
FUWD011452719
[FUWD] metagenome; unknown
38
114
+
Ile
GAT
[ENA]
¢þ
>WENV170624390
FUWD013180988
[FUWD] metagenome; unknown
820
746
-
Ile
GAT
[ENA]
¢þ
>WENV170632675
FUWD013386035
[FUWD] metagenome; unknown
820
746
-
Ile
GAT
[ENA]
¢þ
>WENV170680839
LFEF01026880
[LFEF] freshwater metagenome; waterbloom
1281
1357
+
Ile
GAT
[ENA]
¢þ
>WENV170713587
LNFM01035278
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1747
1821
+
Ile
GAT
[ENA]
¢þ
>C181175930
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1579527
1579601
+
Ile
GAT
-
¡û
>C181175938
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2010909
2010983
+
Ile
GAT
-
¡û
>C181175942
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2573380
2573454
+
Ile
GAT
-
¡û
>C191161890
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
1233156
1233230
+
Ile
GAT
-
¡û
>C191161894
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
1791686
1791760
+
Ile
GAT
-
¡û
>C191161905
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
3008807
3008733
-
Ile
GAT
-
¡û
>W1910183400
BJNR01000037
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
2140
2214
+
Ile
GAT
[ENA]
¡û
>W1910728177
MGWJ01000017
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
16263
16337
+
Ile
GAT
[ENA]
¡û
>W1910808822
MUGQ01000016
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
2141
2215
+
Ile
GAT
[ENA]
¡û
>W1910808961
MUGT01000215
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
86
160
+
Ile
GAT
[ENA]
¡û
>W1911564265
PCMW01000001
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
3620
3546
-
Ile
GAT
[ENA]
¡û
>W1911749557
QWGR01000031
Bacteroidota
Maribellus luteus XSD2 [QWGR]
3587
3512
-
Ile
GAT
[ENA]
¡û
>SRA1002884
SRR002326.73469
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
189
265
+
Ile
GAT
[SRA]
>SRA1003632
SRR002327.76491
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
49
125
+
Ile
GAT
[SRA]
>W1810265880
PQVG01000018
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
1926
2000
+
Ile
GAT
[ENA]
¡û
>SRA1004407
SRR006906.23050
metagenomic water samples (SRP000427)
136
60
-
Ile
GAT
[SRA]
>SRA1004652
SRR006906.95132
metagenomic water samples (SRP000427)
131
207
+
Ile
GAT
[SRA]
>SRA1004970
SRR006906.202495
metagenomic water samples (SRP000427)
158
234
+
Ile
GAT
[SRA]
>W1810695788
QLST01000007
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
169858
169932
+
Ile
GAT
[ENA]
¡û
>W1810695803
QLST01000027
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
2042
2116
+
Ile
GAT
[ENA]
¡û
>W1810695805
QLST01000030
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
2638
2712
+
Ile
GAT
[ENA]
¡û
>W1810695903
QLSV01000028
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
1850
1924
+
Ile
GAT
[ENA]
¡û
>C151024011
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
2734203
2734279
+
Ile
GAT
[Ensembl]
¡û
>C151024014
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
3389108
3389184
+
Ile
GAT
[Ensembl]
¡û
>ENV09000798
ABSP01039842
Freshwater sediment metagenome lwMethane_C1
19
93
+
Ile
GAT
[ENA]
¡û
>W1511346391
JRHC01000015
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
3556
3480
-
Ile
GAT
[ENA]
¡û
>W1511346598
JRHH01000003
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
142386
142460
+
Ile
GAT
[ENA]
¡û
>WENV047250
AACY022650542
Marine microbial communities from Global Ocean Sampling (GOS)
116
192
+
Ile
GAT
[ENA]
>C121017005
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1180731
1180807
+
Ile
GAT
[Ensembl]
¡û
>C121017015
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
2932390
2932314
-
Ile
GAT
[Ensembl]
¡û
>C121017017
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
2694140
2694064
-
Ile
GAT
[Ensembl]
¡û
>WENV057595
AACY023299754
Marine microbial communities from Global Ocean Sampling (GOS)
797
873
+
Ile
GAT
[ENA]
>W1610535000
JRLU01000023
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
1691
1767
+
Ile
GAT
[ENA]
¡û
>W1610535186
JRLZ01000013
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
261
185
-
Ile
GAT
[ENA]
¡û
>W1710505797
FMTY01000014
Bacteroidota
Flavobacterium saliperosum [FMTY]
3491
3415
-
Ile
GAT
[ENA]
¡û
>W1710541081
FNYA01000017
Bacteroidota
Flavobacterium terrigena [FNYA]
2122
2198
+
Ile
GAT
[ENA]
¡û
>W1710553633
FOHT01000069
Bacteroidota
Draconibacterium orientale [FOHT]
2288
2364
+
Ile
GAT
[ENA]
¡û
>W1710637236
JRLU01000023
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
1691
1767
+
Ile
GAT
[ENA]
¡û
>W1710637422
JRLZ01000013
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
261
185
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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