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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182439 (55 seq.)
>W1710875558
LMOM01000021
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
258397
258321
-
Pro
CGG
[ENA]
¡û
>W1711743946
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
164555
164479
-
Pro
CGG
[ENA]
¡û
>W1712080649
NHMK01000009
Deinococcota
Deinococcus indicus [NHMK]
487633
487709
+
Pro
CGG
[ENA]
¡û
>W131104580
APCS01000062
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
20447
20523
+
Pro
CGG
[ENA]
¡û
>W131176772
ARKH01000097
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
34608
34532
-
Pro
CGG
[ENA]
¡û
>W131178631
ARLS01000034
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
35280
35356
+
Pro
CGG
[ENA]
¡û
>W131213895
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
2120961
2121037
+
Pro
CGG
[ENA]
¡û
>W131237076
AUMV01000001
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
449264
449188
-
Pro
CGG
[ENA]
¡û
>C007729
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
1521063
1521139
+
Pro
CGG
[Ensembl]
¡û
>C007964
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1127890
1127814
-
Pro
CGG
[Ensembl]
¡û
>WENV180232056
OBCO01000077
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
77030
77106
+
Pro
CGG
[ENA]
¢þ
>WENV180233033
OBCP01000072
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
159680
159604
-
Pro
CGG
[ENA]
¢þ
>WENV180569730
OCLR01000364
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
15369
15293
-
Pro
CGG
[ENA]
¢þ
>WENV180570675
OCLS01000378
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
15412
15336
-
Pro
CGG
[ENA]
¢þ
>WENV180571391
OCLT01000075
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
159583
159507
-
Pro
CGG
[ENA]
¢þ
>WENV180573638
OCLW01000072
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
77058
77134
+
Pro
CGG
[ENA]
¢þ
>WENV180639705
OCRL01000076
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
77030
77106
+
Pro
CGG
[ENA]
¢þ
>WENV180640638
OCRM01000074
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
77030
77106
+
Pro
CGG
[ENA]
¢þ
>W141154762
AXLL01000032
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
11650
11726
+
Pro
CGG
[ENA]
¡û
>W141169907
AXWT01000008
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
2105
2029
-
Pro
CGG
[ENA]
¡û
>W141220825
AZYF01000510
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
1440
1364
-
Pro
CGG
[ENA]
¡û
>WENV182454202
OIML01015499
[OIML] human gut metagenome; human gut
557
481
-
Pro
CGG
[ENA]
¢þ
>WENV182491019
OISI01008002
[OISI] human gut metagenome; human gut
219
143
-
Pro
CGG
[ENA]
¢þ
>WENV170991649
MWWA01271563
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
240
164
-
Pro
CGG
[ENA]
¢þ
>C181134317
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
770000
769924
-
Pro
CGG
-
¡û
>C181179551
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
920882
920958
+
Pro
CGG
-
¡û
>C181185085
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
1630532
1630608
+
Pro
CGG
-
¡û
>C181196456
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1119670
1119746
+
Pro
CGG
-
¡û
>C191018469
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
1863153
1863077
-
Pro
CGG
-
¡û
>W141525672
JHAC01000006
Deinococcota
Deinococcus phoenicis [JHAC]
19779
19855
+
Pro
CGG
[ENA]
¡û
>C191121226
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
1726678
1726602
-
Pro
CGG
-
¡û
>W09102005
AAHE01000004
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
157621
157545
-
Pro
CGG
[ENA]
¡û
>W141561451
JHYL01000002
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
77224
77300
+
Pro
CGG
[ENA]
¡û
>W141702054
JMLF01000002
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
159849
159773
-
Pro
CGG
[ENA]
¡û
>W141821144
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
909951
909875
-
Pro
CGG
[ENA]
¡û
>C09103910
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
1501274
1501198
-
Pro
CGG
[Ensembl]
¡û
>W1911597481
PNOR01000011
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
68340
68416
+
Pro
CGG
[ENA]
¡û
>W1911788263
QYCQ01000027
Deinococcota
Deinococcus sp. RM [QYCQ]
1552
1628
+
Pro
CGG
[ENA]
¡û
>W1911802523
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
885466
885390
-
Pro
CGG
[ENA]
¡û
>W1810003526
BFAG01000001
Deinococcota
Deinococcus aerius TR0125 [BFAG]
181431
181355
-
Pro
CGG
[ENA]
¡û
>W1810238332
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
3454337
3454413
+
Pro
CGG
[ENA]
¡û
>W1810423317
PYSV01000002
Deinococcota
Deinococcus arcticus OD32 [PYSV]
119903
119827
-
Pro
CGG
[ENA]
¡û
>C151081875
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1690
1766
+
Pro
CGG
[Ensembl]
¡û
>C10105366
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1127890
1127814
-
Pro
CGG
[Ensembl]
¡û
>C11107293
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
1127890
1127814
-
Pro
CGG
[Ensembl]
¡û
>C121002063
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2219497
2219573
+
Pro
CGG
[Ensembl]
¡û
>C161034768
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2237804
2237728
-
Pro
CGG
[Ensembl]
¡û
>C161061590
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
1552696
1552772
+
Pro
CGG
[Ensembl]
¡û
>C161082968
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1593770
1593846
+
Pro
CGG
-
¡û
>W1610061597
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1871144
1871068
-
Pro
CGG
[ENA]
¡û
>C131003585
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
3606631
3606555
-
Pro
CGG
[Ensembl]
¡û
>W1610737904
LMOM01000021
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
258397
258321
-
Pro
CGG
[ENA]
¡û
>W1710059262
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1871144
1871068
-
Pro
CGG
[ENA]
¡û
>W1710542261
FNZA01000003
Deinococcota
Deinococcus reticulitermitis [FNZA]
60807
60883
+
Pro
CGG
[ENA]
¡û
>W1710605335
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
1106195
1106119
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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