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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182530 (27 seq.)
>A171000859
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
811160
811236
+
Tyr
GTA
-
¡û
>A171001018
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1740772
1740696
-
Tyr
GTA
-
¡û
>A171001260
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1157385
1157461
+
Tyr
GTA
-
¡û
>A171002348
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594502
594428
-
Tyr
GTA
-
¡û
>A171004491
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1276718
1276642
-
Tyr
GTA
-
¡û
>WENV180275582
OBHT01071785
[OBHT] metagenome; hydrothermal vent
94
18
-
Tyr
GTA
[ENA]
¢þ
>WENV180287210
OBIK01002226
[OBIK] hydrothermal vent metagenome; sea water
2
78
+
Tyr
GTA
[ENA]
¢þ
>WENV180316917
OBKJ01001773
[OBKJ] metagenome; hydrothermal vent
341
417
+
Tyr
GTA
[ENA]
¢þ
>WENV180332428
OBLD01007588
[OBLD] metagenome; water
62
138
+
Tyr
GTA
[ENA]
¢þ
>WENV181212888
OFBU01000764
[OFBU] metagenome; hydrothermal vent
3788
3712
-
Tyr
GTA
[ENA]
¢þ
>WENV181212988
OFBU01003541
[OFBU] metagenome; hydrothermal vent
684
608
-
Tyr
GTA
[ENA]
¢þ
>WENV181213467
OFBV01003765
[OFBV] metagenome; hydrothermal vent
1319
1395
+
Tyr
GTA
[ENA]
¢þ
>WENV181214081
OFBW01010328
[OFBW] metagenome; hydrothermal vent
618
694
+
Tyr
GTA
[ENA]
¢þ
>WENV181214377
OFBX01006299
[OFBX] metagenome; hydrothermal vent
198
122
-
Tyr
GTA
[ENA]
¢þ
>WENV181214577
OFBY01002278
[OFBY] metagenome; hydrothermal vent
1607
1683
+
Tyr
GTA
[ENA]
¢þ
>WENV181215066
OFBZ01002361
[OFBZ] metagenome; hydrothermal vent
713
789
+
Tyr
GTA
[ENA]
¢þ
>WENV181215665
OFCA01006980
[OFCA] metagenome; hydrothermal vent
392
316
-
Tyr
GTA
[ENA]
¢þ
>WENV181216149
OFCB01006168
[OFCB] metagenome; hydrothermal vent
1039
1115
+
Tyr
GTA
[ENA]
¢þ
>At0939
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
863656
863732
+
Tyr
GTA
[Ensembl]
¡û
>W1910067442
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
37112
37036
-
Tyr
GTA
[ENA]
¡û
>W1610001106
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
82925
83001
+
Tyr
GTA
[ENA]
¡û
>W1610001537
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
478725
478801
+
Tyr
GTA
[ENA]
¡û
>W1610001638
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
38842
38766
-
Tyr
GTA
[ENA]
¡û
>W1610002130
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
35299
35225
-
Tyr
GTA
[ENA]
¡û
>W1610004276
AGJL01000001
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
56183
56107
-
Tyr
GTA
[ENA]
¡û
>W1610018089
APMM01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
45165
45089
-
Tyr
GTA
[ENA]
¡û
>W1610018639
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
965433
965509
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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