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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182592 (71 seq.)
>WENV180705855
ODEJ01033917
[ODEJ] human metagenome; G_DNA_Tongue dorsum
105
31
-
Arg
CCT
[ENA]
¡û
>WENV180719856
ODGJ01007436
[ODGJ] human metagenome; G_DNA_Tongue dorsum
829
904
+
Arg
CCT
[ENA]
¡û
>WENV180724746
ODGR01002350
[ODGR] human metagenome; G_DNA_Tongue dorsum
9191
9116
-
Arg
CCT
[ENA]
¡û
>WENV180757936
ODHW01003376
[ODHW] human metagenome; G_DNA_Tongue dorsum
5723
5649
-
Arg
CCT
[ENA]
¡û
>WENV180764421
ODIA01099861
[ODIA] human metagenome; G_DNA_Tongue dorsum
13
87
+
Arg
CCT
[ENA]
¡û
>WENV180769675
ODIG01129741
[ODIG] human metagenome; G_DNA_Tongue dorsum
211
137
-
Arg
CCT
[ENA]
¡û
>WENV180773936
ODIJ01004428
[ODIJ] human metagenome; G_DNA_Tongue dorsum
4985
4911
-
Arg
CCT
[ENA]
¡û
>WENV180779433
ODIN01004376
[ODIN] human metagenome; G_DNA_Throat
921
995
+
Arg
CCT
[ENA]
¡û
>WENV180782492
ODIQ01000026
[ODIQ] human metagenome; G_DNA_Tongue dorsum
26227
26301
+
Arg
CCT
[ENA]
¡û
>WENV180792475
ODIW01000561
[ODIW] human metagenome; G_DNA_Tongue dorsum
9220
9144
-
Arg
CCT
[ENA]
¡û
>WENV180795366
ODIZ01137195
[ODIZ] human metagenome; G_DNA_Tongue dorsum
85
160
+
Arg
CCT
[ENA]
¡û
>WENV180803252
ODJE01068981
[ODJE] human metagenome; G_DNA_Tongue dorsum
454
379
-
Arg
CCT
[ENA]
¡û
>WENV180806576
ODJH01069801
[ODJH] human metagenome; G_DNA_Tongue dorsum
163
237
+
Arg
CCT
[ENA]
¡û
>WENV180809734
ODJK01041208
[ODJK] human metagenome; G_DNA_Subgingival plaque
89
14
-
Arg
CCT
[ENA]
¡û
>WENV180811121
ODJM01043189
[ODJM] human metagenome; G_DNA_Buccal mucosa
119
193
+
Arg
CCT
[ENA]
¡û
>WENV180814495
ODJO01019428
[ODJO] human metagenome; G_DNA_Supragingival plaque
1731
1805
+
Arg
CCT
[ENA]
¡û
>WENV180816484
ODJP01017317
[ODJP] human metagenome; G_DNA_Tongue dorsum
767
693
-
Arg
CCT
[ENA]
¡û
>WENV180820138
ODJR01002179
[ODJR] human metagenome; G_DNA_Tongue dorsum
8835
8761
-
Arg
CCT
[ENA]
¡û
>WENV180844900
ODKP01020475
[ODKP] human metagenome; G_DNA_Anterior nares
137
212
+
Arg
CCT
[ENA]
¡û
>WENV180852950
ODKW01013501
[ODKW] human metagenome; G_DNA_Tongue dorsum
660
734
+
Arg
CCT
[ENA]
¡û
>WENV180853998
ODKX01000497
[ODKX] human metagenome; G_DNA_Tongue dorsum
20374
20300
-
Arg
CCT
[ENA]
¡û
>WENV180861937
ODLE01019948
[ODLE] human metagenome; G_DNA_Tongue dorsum
390
465
+
Arg
CCT
[ENA]
¡û
>WENV180863624
ODLH01000854
[ODLH] human metagenome; G_DNA_Tongue dorsum
448
374
-
Arg
CCT
[ENA]
¡û
>WENV180874666
ODLQ01003002
[ODLQ] human metagenome; G_DNA_Tongue dorsum
539
614
+
Arg
CCT
[ENA]
¡û
>WENV180881032
ODLZ01125101
[ODLZ] human metagenome; G_DNA_Tongue dorsum
142
68
-
Arg
CCT
[ENA]
¡û
>WENV180883108
ODMC01001783
[ODMC] human metagenome; G_DNA_Tongue dorsum
534
609
+
Arg
CCT
[ENA]
¡û
>WENV180897384
ODNI01019854
[ODNI] human metagenome; G_DNA_Tongue dorsum
1074
998
-
Arg
CCT
[ENA]
¡û
>WENV180897445
ODNI01024149
[ODNI] human metagenome; G_DNA_Tongue dorsum
424
498
+
Arg
CCT
[ENA]
¡û
>WENV180900460
ODOJ01001891
[ODOJ] human metagenome; G_DNA_Tongue dorsum
873
948
+
Arg
CCT
[ENA]
¡û
>WENV180901894
ODOK01007095
[ODOK] human metagenome; G_DNA_Tongue dorsum
532
606
+
Arg
CCT
[ENA]
¡û
>WENV180917339
ODTD01014459
[ODTD] human metagenome; G_DNA_Tongue dorsum
1417
1341
-
Arg
CCT
[ENA]
¡û
>WENV180929441
ODTN01002901
[ODTN] human metagenome; G_DNA_Tongue dorsum
4024
3950
-
Arg
CCT
[ENA]
¡û
>WENV180931915
ODTP01015143
[ODTP] human metagenome; G_DNA_Tongue dorsum
143
217
+
Arg
CCT
[ENA]
¡û
>WENV180950355
ODUG01202215
[ODUG] human metagenome; G_DNA_Tongue dorsum
91
166
+
Arg
CCT
[ENA]
¡û
>WENV180952505
ODUI01000145
[ODUI] human metagenome; G_DNA_Tongue dorsum
17515
17441
-
Arg
CCT
[ENA]
¡û
>WENV180959082
ODUM01000054
[ODUM] human metagenome; G_DNA_Tongue dorsum
825
900
+
Arg
CCT
[ENA]
¡û
>WENV180968694
ODUT01059080
[ODUT] human metagenome; G_DNA_Tongue dorsum
439
513
+
Arg
CCT
[ENA]
¡û
>WENV180976522
ODUY01131402
[ODUY] human metagenome; G_DNA_Supragingival plaque
300
375
+
Arg
CCT
[ENA]
¡û
>WENV180978129
ODUZ01020064
[ODUZ] human metagenome; G_DNA_Tongue dorsum
902
828
-
Arg
CCT
[ENA]
¡û
>WENV180978934
ODVA01043960
[ODVA] human metagenome; G_DNA_Buccal mucosa
200
275
+
Arg
CCT
[ENA]
¡û
>WENV180990749
ODVN01004293
[ODVN] human metagenome; G_DNA_Tongue dorsum
5256
5181
-
Arg
CCT
[ENA]
¡û
>WENV180998289
ODVT01000131
[ODVT] human metagenome; G_DNA_Buccal mucosa
30690
30614
-
Arg
CCT
[ENA]
¡û
>WENV181004133
ODVX01107943
[ODVX] human metagenome; G_DNA_Supragingival plaque
158
83
-
Arg
CCT
[ENA]
¡û
>WENV181013958
ODWN01007169
[ODWN] human metagenome; G_DNA_Tongue dorsum
2391
2467
+
Arg
CCT
[ENA]
¡û
>WENV181017354
ODWR01057483
[ODWR] human metagenome; G_DNA_Tongue dorsum
198
274
+
Arg
CCT
[ENA]
¡û
>WENV181032943
ODXN01001409
[ODXN] human metagenome; G_DNA_Tongue dorsum
9999
9925
-
Arg
CCT
[ENA]
¡û
>WENV181039504
ODXQ01025629
[ODXQ] human metagenome; G_DNA_Tongue dorsum
435
509
+
Arg
CCT
[ENA]
¡û
>WENV181039672
ODXQ01038792
[ODXQ] human metagenome; G_DNA_Tongue dorsum
900
974
+
Arg
CCT
[ENA]
¡û
>WENV181046173
ODXW01010991
[ODXW] human metagenome; G_DNA_Tongue dorsum
30
106
+
Arg
CCT
[ENA]
¡û
>WENV181058176
ODYL01004693
[ODYL] human metagenome; G_DNA_Tongue dorsum
5261
5186
-
Arg
CCT
[ENA]
¡û
>WENV181064755
ODYP01089381
[ODYP] human metagenome; G_DNA_Supragingival plaque
363
289
-
Arg
CCT
[ENA]
¡û
>WENV181068564
ODZZ01000369
[ODZZ] human metagenome; G_DNA_Tongue dorsum
14219
14294
+
Arg
CCT
[ENA]
¡û
>WENV181074226
OEAO01004749
[OEAO] human metagenome; G_DNA_Tongue dorsum
1377
1451
+
Arg
CCT
[ENA]
¡û
>WENV181087458
OEAY01046453
[OEAY] human metagenome; G_DNA_Tongue dorsum
516
441
-
Arg
CCT
[ENA]
¡û
>WENV181095502
OEBY01010407
[OEBY] human metagenome; G_DNA_Tongue dorsum
2979
2903
-
Arg
CCT
[ENA]
¡û
>WENV181096046
OEBY01044110
[OEBY] human metagenome; G_DNA_Tongue dorsum
424
498
+
Arg
CCT
[ENA]
¡û
>WENV181097748
OECA01023868
[OECA] human metagenome; G_DNA_Tongue dorsum
873
947
+
Arg
CCT
[ENA]
¡û
>WENV181102508
OECT01004561
[OECT] human metagenome; G_DNA_Tongue dorsum
5462
5386
-
Arg
CCT
[ENA]
¡û
>WENV181102562
OECT01005404
[OECT] human metagenome; G_DNA_Tongue dorsum
4895
4820
-
Arg
CCT
[ENA]
¡û
>WENV181105341
OEED01003002
[OEED] human metagenome; G_DNA_Tongue dorsum
2242
2318
+
Arg
CCT
[ENA]
¡û
>WENV181109378
OEEJ01038640
[OEEJ] human metagenome; G_DNA_Tongue dorsum
98
23
-
Arg
CCT
[ENA]
¡û
>WENV181113509
OEEL01034321
[OEEL] human metagenome; G_DNA_Tongue dorsum
428
503
+
Arg
CCT
[ENA]
¡û
>WENV181113773
OEEL01106057
[OEEL] human metagenome; G_DNA_Tongue dorsum
76
1
-
Arg
CCT
[ENA]
¡û
>WENV181115606
OEEO01159649
[OEEO] human metagenome; G_DNA_Supragingival plaque
84
159
+
Arg
CCT
[ENA]
¡û
>WENV181128973
OEFX01001497
[OEFX] human metagenome; G_DNA_Tongue dorsum
6347
6272
-
Arg
CCT
[ENA]
¡û
>WENV181130730
OEFY01054760
[OEFY] human metagenome; G_DNA_Throat
235
160
-
Arg
CCT
[ENA]
¡û
>WENV181135403
OEGG01014262
[OEGG] human metagenome; G_DNA_Tongue dorsum
624
550
-
Arg
CCT
[ENA]
¡û
>WENV181141520
OEGT01006954
[OEGT] human metagenome; G_DNA_Throat
262
337
+
Arg
CCT
[ENA]
¡û
>WENV181176819
OEJR01051319
[OEJR] human metagenome; G_DNA_Saliva
195
270
+
Arg
CCT
[ENA]
¡û
>C241292882
CP130060
Bacillota
Stomatobaculum sp. F0698 [CP130060]
2033323
2033248
-
Arg
CCT
-
¡û
>W121009510
AGEL01000015
Bacillota
Stomatobaculum longum [AGEL]
35532
35607
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK