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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182616 (33 seq.)
>W1711386268
MEFD01000002
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
19269
19345
+
Met
CAT
[ENA]
¡û
>W1712102928
NIOE01000016
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
39630
39554
-
Met
CAT
[ENA]
¡û
>W1712102945
NIOF01000001
Betaproteobacteria
Roseateles aquatilis [NIOF]
1233520
1233444
-
Met
CAT
[ENA]
¡û
>W1712103024
NIOG01000004
Betaproteobacteria
Roseateles terrae [NIOG]
454323
454399
+
Met
CAT
[ENA]
¡û
>WENV180016741
FSVW01000826
[FSVW] metagenome; soil
4302
4378
+
Ile2
CAT
[ENA]
¢þ
>WENV180016781
FSVW01001899
[FSVW] metagenome; soil
21
97
+
Ile2
CAT
[ENA]
¢þ
>WENV180016784
FSVW01001990
[FSVW] metagenome; soil
120
196
+
Ile2
CAT
[ENA]
¢þ
>WENV180016830
FSVW01003765
[FSVW] metagenome; soil
7406
7479
+
Ile2
CAT
[ENA]
¢þ
>WENV180030561
FTJN01000147
[FTJN] metagenome; soil
5902
5826
-
Ile2
CAT
[ENA]
¢þ
>WENV180103364
OAPA01021385
[OAPA] marine metagenome; ENVO:00002010
493
417
-
Ile2
CAT
[ENA]
¢þ
>WENV180114820
OAPS01050760
[OAPS] marine metagenome; sea water
438
362
-
Ile2
CAT
[ENA]
¢þ
>WENV180732025
ODGW01074389
[ODGW] human metagenome; G_DNA_Supragingival plaque
116
192
+
Ile2
CAT
[ENA]
¢þ
>WENV181400564
OFSF01010733
[OFSF] wastewater metagenome; Exp Tend VB 100WW
971
1047
+
Ile2
CAT
[ENA]
¢þ
>WENV183712177
PDWI01091241
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2030
2106
+
Ile2
CAT
[ENA]
¢þ
>WENV170639824
JFJP01009054
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4223
4147
-
Met
CAT
[ENA]
¢þ
>WENV170657005
JTFO01068918
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
148
224
+
Met
CAT
[ENA]
¢þ
>C191018743
CP021250
Betaproteobacteria
Bordetella sp. J329 [CP021250]
1227737
1227813
+
Met
CAT
-
¡û
>C191116572
CP033936
Betaproteobacteria
Kerstersia gyiorum SWMUKG01 [CP033936]
1316837
1316913
+
Met
CAT
-
¡û
>W1911647476
QAJN01000004
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
18611
18535
-
Met
CAT
[ENA]
¡û
>W1911740738
QUSW01000005
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
476454
476530
+
Met
CAT
[ENA]
¡û
>W1911770742
QXJC01000003
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
533092
533016
-
Met
CAT
[ENA]
¡û
>W1810081348
PEOG01000019
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
22905
22981
+
Met
CAT
[ENA]
¡û
>SRA1003610
SRR002327.67645
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
174
98
-
Met
CAT
[SRA]
>W1810884645
QUMT01000003
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
88915
88839
-
Met
CAT
[ENA]
¡û
>C151081699
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
1154449
1154373
-
Met
CAT
[Ensembl]
¡û
>W1511595703
LBNE01000002
Betaproteobacteria
Kerstersia gyiorum CG1 [LBNE]
547518
547442
-
Met
CAT
[ENA]
¡û
>WENV046954
AACY022630898
Marine microbial communities from Global Ocean Sampling (GOS)
447
369
-
Met
CAT
[ENA]
>W11187690
CAFG01000435
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
2234
2158
-
Met
CAT
[ENA]
¡û
>C161029948
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
1554649
1554573
-
Met
CAT
[Ensembl]
¡û
>C161060268
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1246249
1246325
+
Met
CAT
[Ensembl]
¡û
>W121127051
CAFG01000435
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
2234
2158
-
Met
CAT
[ENA]
¡û
>W1710544490
FOAV01000014
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
103668
103744
+
Met
CAT
[ENA]
¡û
>W1710575418
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
569409
569485
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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