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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182651 (8 seq.)
>WENV180142225
OATV01008750
[OATV] human gut metagenome; faeces
277
351
+
Ala
TGC
[ENA]
¡û
>WENV180549803
OCIZ01000310
[OCIZ] human oral metagenome; human oral
5935
6009
+
Ala
TGC
[ENA]
¡û
>WENV180773563
ODIJ01000597
[ODIJ] human metagenome; G_DNA_Tongue dorsum
18915
18989
+
Ala
TGC
[ENA]
¡û
>WENV180809485
ODJK01020003
[ODJK] human metagenome; G_DNA_Subgingival plaque
181
107
-
Ala
TGC
[ENA]
¡û
>WENV180902514
ODOK01072825
[ODOK] human metagenome; G_DNA_Tongue dorsum
141
215
+
Ala
TGC
[ENA]
¡û
>WENV180978635
ODVA01000448
[ODVA] human metagenome; G_DNA_Buccal mucosa
6565
6639
+
Ala
TGC
[ENA]
¡û
>WENV181130146
OEFY01001550
[OEFY] human metagenome; G_DNA_Throat
905
979
+
Ala
TGC
[ENA]
¡û
>WENV182941758
OKVG01007039
[OKVG] human gut metagenome; human gut
2108
2182
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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