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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182792 (81 seq.)
>W1711581127
MNTT01000008
Alphaproteobacteria
Acetobacter sp. 46_36 [MNTT]
86310
86234
-
Arg
CCT
[ENA]
¡û
>WENV180130275
OATG01000031
[OATG] human gut metagenome; faeces
96253
96177
-
Arg
CCT
[ENA]
¡û
>WENV180200764
OBAF01000051
[OBAF] human gut metagenome; human gut
86774
86698
-
Arg
CCT
[ENA]
¡û
>WENV180214929
OBAQ01000041
[OBAQ] human gut metagenome; human gut
86774
86698
-
Arg
CCT
[ENA]
¡û
>WENV180302145
OBJF01000622
[OBJF] human gut metagenome; feces
5529
5605
+
Arg
CCT
[ENA]
¡û
>WENV180321398
OBKR01000042
[OBKR] human gut metagenome; feces
76995
77071
+
Arg
CCT
[ENA]
¡û
>WENV180577824
OCMB01000236
[OCMB] human gut metagenome; human gut
2257
2181
-
Arg
CCT
[ENA]
¡û
>WENV180608840
OCPV01000042
[OCPV] human gut metagenome; human gut
86774
86698
-
Arg
CCT
[ENA]
¡û
>WENV180886194
ODME01032233
[ODME] human metagenome; G_DNA_Stool
63
139
+
Arg
CCT
[ENA]
¡û
>WENV180892128
ODMR01000045
[ODMR] human metagenome; G_DNA_Stool
86392
86316
-
Arg
CCT
[ENA]
¡û
>WENV180913611
ODSV01000081
[ODSV] human metagenome; G_DNA_Stool
48179
48103
-
Arg
CCT
[ENA]
¡û
>WENV180942240
ODTZ01068724
[ODTZ] human metagenome; G_DNA_Stool
255
179
-
Arg
CCT
[ENA]
¡û
>WENV181022127
ODWW01000020
[ODWW] human metagenome; G_DNA_Stool
85999
85923
-
Arg
CCT
[ENA]
¡û
>WENV181128075
OEFW01032425
[OEFW] human metagenome; G_DNA_Stool
582
506
-
Arg
CCT
[ENA]
¡û
>WENV181441454
OGDN01007440
[OGDN] human gut metagenome; human gut
2139
2063
-
Arg
CCT
[ENA]
¡û
>WENV181519296
OGHC01000021
[OGHC] metagenome; Human gut stool
85997
85921
-
Arg
CCT
[ENA]
¡û
>WENV181533924
OGHS01000507
[OGHS] metagenome; Human gut stool
5504
5428
-
Arg
CCT
[ENA]
¡û
>WENV181707402
OGPL01021265
[OGPL] human gut metagenome; faeces
1134
1210
+
Arg
CCT
[ENA]
¡û
>WENV181747783
OGQO01000067
[OGQO] human gut metagenome; faeces
69694
69618
-
Arg
CCT
[ENA]
¡û
>WENV181824859
OGUK01016051
[OGUK] human gut metagenome; faeces
928
1004
+
Arg
CCT
[ENA]
¡û
>WENV182013678
OHBO01002943
[OHBO] human gut metagenome; feces
2323
2247
-
Arg
CCT
[ENA]
¡û
>WENV182016697
OHBV01000017
[OHBV] human gut metagenome; feces
76726
76802
+
Arg
CCT
[ENA]
¡û
>WENV182019943
OHBZ01003085
[OHBZ] human gut metagenome; feces
1503
1427
-
Arg
CCT
[ENA]
¡û
>WENV182035309
OHDA01000053
[OHDA] human gut metagenome; feces
76726
76802
+
Arg
CCT
[ENA]
¡û
>WENV182039292
OHDF01046247
[OHDF] human gut metagenome; feces
35
111
+
Arg
CCT
[ENA]
¡û
>WENV182040176
OHDH01000018
[OHDH] human gut metagenome; feces
71040
70964
-
Arg
CCT
[ENA]
¡û
>WENV182048817
OHEB01007539
[OHEB] human gut metagenome; feces
1436
1360
-
Arg
CCT
[ENA]
¡û
>WENV182063237
OHEX01000019
[OHEX] human gut metagenome; feces
112790
112866
+
Arg
CCT
[ENA]
¡û
>WENV182067012
OHFD01000080
[OHFD] human gut metagenome; feces
16518
16442
-
Arg
CCT
[ENA]
¡û
>WENV182091900
OHHG01000081
[OHHG] human gut metagenome; feces
16440
16364
-
Arg
CCT
[ENA]
¡û
>WENV182097454
OHHP01000009
[OHHP] human gut metagenome; feces
128744
128820
+
Arg
CCT
[ENA]
¡û
>WENV182102818
OHHY01000017
[OHHY] human gut metagenome; feces
71050
70974
-
Arg
CCT
[ENA]
¡û
>WENV182114805
OHIZ01006211
[OHIZ] human gut metagenome; feces
72
148
+
Arg
CCT
[ENA]
¡û
>WENV182115399
OHJA01003963
[OHJA] human gut metagenome; feces
1233
1309
+
Arg
CCT
[ENA]
¡û
>WENV182132001
OHKE01000050
[OHKE] human gut metagenome; feces
18986
19062
+
Arg
CCT
[ENA]
¡û
>WENV182140919
OHKS01000961
[OHKS] human gut metagenome; feces
8568
8644
+
Arg
CCT
[ENA]
¡û
>WENV182154791
OHLP01011614
[OHLP] human gut metagenome; feces
1239
1315
+
Arg
CCT
[ENA]
¡û
>WENV182155090
OHLQ01000044
[OHLQ] human gut metagenome; feces
76726
76802
+
Arg
CCT
[ENA]
¡û
>WENV182157308
OHLW01013449
[OHLW] human gut metagenome; feces
751
675
-
Arg
CCT
[ENA]
¡û
>WENV182168435
OHMT01000139
[OHMT] human gut metagenome; feces
11789
11713
-
Arg
CCT
[ENA]
¡û
>WENV182232778
OHRP01000085
[OHRP] human gut metagenome; feces
16453
16377
-
Arg
CCT
[ENA]
¡û
>WENV182261537
OHTM01000014
[OHTM] human gut metagenome; feces
76324
76400
+
Arg
CCT
[ENA]
¡û
>WENV182396447
OIEL01077981
[OIEL] human gut metagenome; human gut
248
172
-
Arg
CCT
[ENA]
¡û
>WENV182415782
OIGD01000101
[OIGD] human gut metagenome; human gut
32417
32341
-
Arg
CCT
[ENA]
¡û
>WENV182511435
OIWL01000012
[OIWL] human gut metagenome; faeces
150079
150003
-
Arg
CCT
[ENA]
¡û
>WENV182615715
OJKC01006891
[OJKC] metagenome; faeces
3495
3419
-
Arg
CCT
[ENA]
¡û
>WENV182650225
OJMG01058555
[OJMG] human gut metagenome; feces
186
262
+
Arg
CCT
[ENA]
¡û
>WENV182650522
OJMH01000043
[OJMH] human gut metagenome; feces
102866
102942
+
Arg
CCT
[ENA]
¡û
>WENV182653380
OJMI01000113
[OJMI] human gut metagenome; feces
42800
42876
+
Arg
CCT
[ENA]
¡û
>WENV182674865
OJNQ01000354
[OJNQ] human gut metagenome; feces
32358
32282
-
Arg
CCT
[ENA]
¡û
>WENV182686730
OJNZ01034294
[OJNZ] human gut metagenome; human gut
706
782
+
Arg
CCT
[ENA]
¡û
>WENV182703470
OJOT01000054
[OJOT] human gut metagenome; stool sample
3546
3470
-
Arg
CCT
[ENA]
¡û
>WENV182704325
OJOU01000336
[OJOU] human gut metagenome; stool sample
818
742
-
Arg
CCT
[ENA]
¡û
>WENV182708992
OJPB01000008
[OJPB] human gut metagenome; stool sample
75482
75558
+
Arg
CCT
[ENA]
¡û
>WENV182714935
OJPI01000007
[OJPI] human gut metagenome; stool sample
86150
86074
-
Arg
CCT
[ENA]
¡û
>WENV182717535
OJPL01000081
[OJPL] human gut metagenome; stool sample
18217
18141
-
Arg
CCT
[ENA]
¡û
>WENV182719607
OJPN01000318
[OJPN] human gut metagenome; stool sample
34486
34410
-
Arg
CCT
[ENA]
¡û
>WENV182723299
OJPR01002380
[OJPR] human gut metagenome; stool sample
133
57
-
Arg
CCT
[ENA]
¡û
>WENV182730327
OJPZ01000030
[OJPZ] human gut metagenome; stool sample
19068
19144
+
Arg
CCT
[ENA]
¡û
>WENV182733891
OJQE01000008
[OJQE] human gut metagenome; stool sample
86150
86074
-
Arg
CCT
[ENA]
¡û
>WENV182755472
OJRF01000008
[OJRF] human gut metagenome; stool sample
75482
75558
+
Arg
CCT
[ENA]
¡û
>WENV182898134
OKSR01000054
[OKSR] human gut metagenome; feces
76726
76802
+
Arg
CCT
[ENA]
¡û
>WENV182904213
OKSZ01045270
[OKSZ] human gut metagenome; feces
83
159
+
Arg
CCT
[ENA]
¡û
>WENV182909572
OKTI01000170
[OKTI] human gut metagenome; feces
42547
42623
+
Arg
CCT
[ENA]
¡û
>WENV182955670
OKWD01014795
[OKWD] human gut metagenome; human gut
171
95
-
Arg
CCT
[ENA]
¡û
>WENV182971640
OKXI01001045
[OKXI] human gut metagenome; human gut
4973
5049
+
Arg
CCT
[ENA]
¡û
>WENV183075954
OLIW01000923
[OLIW] human gut metagenome; feces
23787
23863
+
Arg
CCT
[ENA]
¡û
>WENV183078703
OLIX01003500
[OLIX] human gut metagenome; feces
8733
8657
-
Arg
CCT
[ENA]
¡û
>WENV183392762
OLZF01000016
[OLZF] human gut metagenome; feces
86154
86078
-
Arg
CCT
[ENA]
¡û
>WENV183412010
OMAL01010503
[OMAL] human gut metagenome; feces
1116
1192
+
Arg
CCT
[ENA]
¡û
>WENV183430376
OMBP01037121
[OMBP] human gut metagenome; feces
418
494
+
Arg
CCT
[ENA]
¡û
>WENV183445755
OMCQ01000076
[OMCQ] human gut metagenome; feces
75353
75429
+
Arg
CCT
[ENA]
¡û
>WENV183454825
OMDF01019118
[OMDF] human gut metagenome; feces
530
606
+
Arg
CCT
[ENA]
¡û
>WENV183464795
OMDZ01055048
[OMDZ] human gut metagenome; feces
460
384
-
Arg
CCT
[ENA]
¡û
>WENV183475413
OMEW01000001
[OMEW] human gut metagenome; feces
258519
258595
+
Arg
CCT
[ENA]
¡û
>WENV183476777
OMFB01000002
[OMFB] human gut metagenome; feces
86111
86035
-
Arg
CCT
[ENA]
¡û
>WENV183482964
OMFN01000022
[OMFN] human gut metagenome; feces
70648
70572
-
Arg
CCT
[ENA]
¡û
>WENV183496106
OMGM01000036
[OMGM] human gut metagenome; feces
75353
75429
+
Arg
CCT
[ENA]
¡û
>WENV183518034
OMNP01049402
[OMNP] human gut metagenome; feces
176
252
+
Arg
CCT
[ENA]
¡û
>WENV183768530
PPYE01390268
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
174
98
-
Arg
CCT
[ENA]
¡û
>WENV170091739
CEAG01021711
[CEAG] gut metagenome; human stools
12253
12329
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK