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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183008 (61 seq.)
>W1710797185
LJSV01000007
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
147297
147381
+
Leu
TAG
[ENA]
¡û
>W1710853411
LLWQ01000162
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
109284
109368
+
Leu
TAG
[ENA]
¡û
>W1711388545
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2562652
2562568
-
Leu
TAG
[ENA]
¡û
>W1711388583
MEHT01000044
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
293884
293800
-
Leu
TAG
[ENA]
¡û
>W1711456303
MJAP01000034
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
326237
326321
+
Leu
TAG
[ENA]
¡û
>C016052
CP000490
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1672687
1672603
-
Leu
TAG
[Ensembl]
¡û
>WENV180114482
OAPS01011478
[OAPS] marine metagenome; sea water
246
162
-
Leu
TAG
[ENA]
¢þ
>WENV180594051
OCOY01020999
[OCOY] marine metagenome; ENVO:00002010
346
430
+
Leu
TAG
[ENA]
¢þ
>WENV181120533
OEFK01009080
[OEFK] marine metagenome; ENVO:00002010 seawater
584
668
+
Leu
TAG
[ENA]
¢þ
>WENV181126420
OEFV01077962
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
363
279
-
Leu
TAG
[ENA]
¢þ
>WENV181170855
OEIV010099922
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
651
567
-
Leu
TAG
[ENA]
¢þ
>WENV181233758
OFET01000075
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
147254
147338
+
Leu
TAG
[ENA]
¢þ
>W141199852
AYXI01000170
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
18554
18638
+
Leu
TAG
[ENA]
¡û
>W141216631
AZVA01000008
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
11116
11032
-
Leu
TAG
[ENA]
¡û
>W141277304
JAEM01000009
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
86291
86207
-
Leu
TAG
[ENA]
¡û
>W141277352
JAEN01000005
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
162975
163059
+
Leu
TAG
[ENA]
¡û
>W141279576
JAGK01000008
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
125264
125348
+
Leu
TAG
[ENA]
¡û
>WENV183733811
PJTY01030166
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
231
315
+
Leu
TAG
[ENA]
¢þ
>WENV183741045
PJUF01031776
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
723
639
-
Leu
TAG
[ENA]
¢þ
>WENV170682597
LFIK01000462
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
18715
18631
-
Leu
TAG
[ENA]
¢þ
>WENV170682675
LFIK01000816
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
17540
17624
+
Leu
TAG
[ENA]
¢þ
>WENV170710233
LNFM01001349
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3103
3019
-
Leu
TAG
[ENA]
¢þ
>WENV170710391
LNFM01001667
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
45834
45918
+
Leu
TAG
[ENA]
¢þ
>C181081674
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1937240
1937156
-
Leu
TAG
-
¡û
>C181108003
CP024899
Alphaproteobacteria
Rhodobaca barguzinensis alga05 [CP024899]
3005585
3005501
-
Leu
TAG
-
¡û
>C181119673
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
2182183
2182267
+
Leu
TAG
-
¡û
>C181203392
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
1143975
1144059
+
Leu
TAG
-
¡û
>C191123063
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
4009358
4009442
+
Leu
TAG
-
¡û
>C191134412
CP035091
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1672402
1672318
-
Leu
TAG
-
¡û
>C191159600
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
1474482
1474398
-
Leu
TAG
-
¡û
>W09103063
AAIT01000009
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
120634
120550
-
Leu
TAG
[ENA]
¡û
>W1910744015
MHZT01000047
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 [MHZT]
55696
55612
-
Leu
TAG
[ENA]
¡û
>W1910744065
MHZU01000049
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
55699
55615
-
Leu
TAG
[ENA]
¡û
>W1911245339
NSJZ01000012
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
66652
66736
+
Leu
TAG
[ENA]
¡û
>W1911538646
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
1123088
1123172
+
Leu
TAG
[ENA]
¡û
>W1911581882
PGOI01000018
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
7551
7467
-
Leu
TAG
[ENA]
¡û
>W1810174016
PJON01000001
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
851614
851530
-
Leu
TAG
[ENA]
¡û
>W1810235990
PPGA01000006
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
175672
175756
+
Leu
TAG
[ENA]
¡û
>W1810268891
PRDS01000002
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
190808
190724
-
Leu
TAG
[ENA]
¡û
>W1810351364
PVEP01000002
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
447024
447108
+
Leu
TAG
[ENA]
¡û
>W1810684497
QKYL01000154
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
96648
96732
+
Leu
TAG
[ENA]
¡û
>W1810685901
QKZQ01000002
Alphaproteobacteria
Roseinatronobacter thiooxidans DSM 13087 [QKZQ]
33951
34035
+
Leu
TAG
[ENA]
¡û
>W1810750734
QOZU01000022
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
582
498
-
Leu
TAG
[ENA]
¡û
>W1810759467
QPJL01000004
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
61562
61478
-
Leu
TAG
[ENA]
¡û
>W1810762351
QPML01000213
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
125041
124957
-
Leu
TAG
[ENA]
¡û
>W1810862229
QTUJ01000001
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
224064
224148
+
Leu
TAG
[ENA]
¡û
>W1810884871
QUMX01000045
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
2180
2096
-
Leu
TAG
[ENA]
¡û
>W1810917907
QWEY01000003
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
226211
226127
-
Leu
TAG
[ENA]
¡û
>W1511348627
JRKO01000071
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
3386
3302
-
Leu
TAG
[ENA]
¡û
>W1511348779
JRKS01000007
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
27179
27095
-
Leu
TAG
[ENA]
¡û
>W121060013
AJFB01001656
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
87
171
+
Leu
TAG
[ENA]
¡û
>W1610661142
LJSV01000007
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
147297
147381
+
Leu
TAG
[ENA]
¡û
>W1610716535
LLWQ01000162
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
109284
109368
+
Leu
TAG
[ENA]
¡û
>W1710518442
FNEA01000002
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
92177
92093
-
Leu
TAG
[ENA]
¡û
>W1710521158
FNGE01000002
Alphaproteobacteria
Paracoccus chinensis [FNGE]
117223
117307
+
Leu
TAG
[ENA]
¡û
>W1710529542
FNOB01000005
Alphaproteobacteria
Allgaiera indica [FNOB]
202425
202341
-
Leu
TAG
[ENA]
¡û
>W1710530069
FNOM01000002
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
475518
475602
+
Leu
TAG
[ENA]
¡û
>W1710563572
FOPU01000001
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
302990
303074
+
Leu
TAG
[ENA]
¡û
>W1710571554
FOWA01000006
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
784
700
-
Leu
TAG
[ENA]
¡û
>W1710574663
FOYK01000002
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
160628
160712
+
Leu
TAG
[ENA]
¡û
>W1710581771
FPKI01000017
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
31350
31434
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK