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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183126 (10 seq.)
>W1711404432
MFYK01000018
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
92481
92405
-
Pro
GGG
[ENA]
¡û
>W1711404556
MFYN01000070
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
1107
1031
-
Pro
GGG
[ENA]
¡û
>W1711404700
MFYR01000004
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
30036
29960
-
Pro
GGG
[ENA]
¡û
>W1711583005
MNWP01000022
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
298
222
-
Pro
GGG
[ENA]
¡û
>WENV180248881
OBEQ010149026
[OBEQ] groundwater metagenome; groundwater
44778
44854
+
Pro
GGG
[ENA]
¢þ
>C161050459
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
609093
609017
-
Pro
GGG
-
¡û
>C161050503
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
609248
609172
-
Pro
GGG
-
¡û
>C161050547
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
609179
609103
-
Pro
GGG
-
¡û
>C161050591
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
608972
608896
-
Pro
GGG
-
¡û
>C161050635
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
609247
609171
-
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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