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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183321 (25 seq.)
>W1711143453
LVHI01000001
Actinomycetota
Rhodococcus kyotonensis [LVHI]
301278
301202
-
Leu
CAA
[ENA]
¡û
>W131251267
CAVJ010000166
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
6618
6542
-
Leu
CAA
[ENA]
¡û
>W1711539264
MLYX02000004
Actinomycetota
Rhodococcus sp. M8 [MLYX]
117199
117275
+
Leu
CAA
[ENA]
¡û
>C171039238
CP015529
Actinomycetota
Rhodococcus sp. WB1 [CP015529]
2254415
2254339
-
Leu
CAA
-
¡û
>C171072224
CP018063
Actinomycetota
Rhodococcus sp. 2G [CP018063]
2131475
2131551
+
Leu
CAA
-
¡û
>W141092544
AVAE01000013
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
42057
42133
+
Leu
CAA
[ENA]
¡û
>W141202633
AZHI01000079
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
11638
11562
-
Leu
CAA
[ENA]
¡û
>WENV183636066
OOJJ01041679
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
202
278
+
Leu
CAA
[ENA]
¢þ
>C181074116
CP022915
Actinomycetota
Rhodococcus pyridinivorans GF3 [CP022915]
3359069
3358993
-
Leu
CAA
-
¡û
>C181107727
CP024890
Actinomycetota
Rhodococcus ruber YYL [CP024890]
2351159
2351234
+
Leu
CAA
-
¡û
>C181225004
LT906450
Actinomycetota
Rhodococcus rhodochrous NCTC10210 [LT906450]
3053537
3053613
+
Leu
CAA
-
¡û
>C141011346
CP006996
Actinomycetota
Rhodococcus pyridinivorans SB3094 [CP006996]
1077149
1077225
+
Leu
CAA
[Ensembl]
¡û
>W1910548926
FZOW01000011
Actinomycetota
Rhodococcus kyotonensis JCM 23211 [FZOW]
60400
60476
+
Leu
CAA
[ENA]
¡û
>W1911765384
QXCQ01000026
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
13780
13855
+
Leu
CAA
[ENA]
¡û
>W1810050260
PCZU01000249
Actinomycetota
Rhodococcus sp. ENV425 [PCZU]
1594
1519
-
Leu
CAA
[ENA]
¡û
>W1810605748
QGNK01000008
Actinomycetota
Rhodococcus sp. Eu-32 [QGNK]
190508
190432
-
Leu
CAA
[ENA]
¡û
>C151080805
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
3265303
3265379
+
Leu
CAA
[Ensembl]
¡û
>W1510053326
CCSD01000105
Actinomycetota
Rhodococcus ruber [CCSD]
27812
27736
-
Leu
CAA
[ENA]
¡û
>W1511640438
LDUF01000001
Actinomycetota
Rhodococcus ruber P25 [LDUF]
654651
654575
-
Leu
CAA
[ENA]
¡û
>W1610048669
BBEG01000381
Actinomycetota
Rhodococcus sp. JCM 9791 [BBEG]
1802
1878
+
Leu
CAA
[ENA]
¡û
>W1610049363
BBEW01000321
Actinomycetota
Rhodococcus sp. HA99 [BBEW]
4052
3976
-
Leu
CAA
[ENA]
¡û
>W1610954461
LVHI01000001
Actinomycetota
Rhodococcus kyotonensis [LVHI]
301278
301202
-
Leu
CAA
[ENA]
¡û
>W1710045762
BBEW01000321
Actinomycetota
Rhodococcus sp. HA99 [BBEW]
4052
3976
-
Leu
CAA
[ENA]
¡û
>W1710072075
BCXC01000001
Actinomycetota
Rhodococcus pyridinivorans JCM 10940 = NBRC 100608 [BCXC]
749885
749809
-
Leu
CAA
[ENA]
¡û
>W1710622288
JNVR01000256
Actinomycetota
Rhodococcus rhodochrous [JNVR]
1876
1800
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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