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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183347 (122 seq.)
>WENV180203175
OBAG01003754
[OBAG] human gut metagenome; human gut
5861
5785
-
fMet
CAT
[ENA]
¡û
>WENV180278886
OBHX01009858
[OBHX] metagenome; feces
1368
1444
+
fMet
CAT
[ENA]
¡û
>WENV180326871
OBKS01216955
[OBKS] human gut metagenome; human gut
239
163
-
fMet
CAT
[ENA]
¡û
>WENV180349970
OBLO01212888
[OBLO] metagenome; feces
161
85
-
fMet
CAT
[ENA]
¡û
>WENV180542385
OCHS01141895
[OCHS] human gut metagenome; human gut
157
81
-
fMet
CAT
[ENA]
¡û
>WENV180549606
OCIY01195579
[OCIY] human gut metagenome; human gut
81
157
+
fMet
CAT
[ENA]
¡û
>WENV180651428
OCSZ01151942
[OCSZ] human gut metagenome; human gut
172
96
-
fMet
CAT
[ENA]
¡û
>WENV180851190
ODKV01034299
[ODKV] human metagenome; G_DNA_Stool
565
641
+
fMet
CAT
[ENA]
¡û
>WENV180963503
ODUN01220048
[ODUN] human metagenome; G_DNA_Stool
11
87
+
fMet
CAT
[ENA]
¡û
>WENV181053353
ODYI01000123
[ODYI] human metagenome; G_DNA_Stool
90859
90783
-
fMet
CAT
[ENA]
¡û
>WENV181072323
OEAN01001579
[OEAN] human metagenome; G_DNA_Stool
11061
11137
+
fMet
CAT
[ENA]
¡û
>WENV181098535
OECI01000079
[OECI] human metagenome; G_DNA_Stool
90859
90783
-
fMet
CAT
[ENA]
¡û
>WENV181118403
OEFH01011320
[OEFH] human metagenome; G_DNA_Stool
1176
1252
+
fMet
CAT
[ENA]
¡û
>WENV181345925
OFML01001872
[OFML] human gut metagenome; human gut
2638
2714
+
fMet
CAT
[ENA]
¡û
>WENV181365237
OFPM01001118
[OFPM] sediment metagenome; Lake sediment
201
277
+
fMet
CAT
[ENA]
¡û
>WENV181437053
OGDF01051427
[OGDF] human gut metagenome; human gut
1326
1250
-
fMet
CAT
[ENA]
¡û
>WENV181478976
OGFG01000464
[OGFG] metagenome; Human gut stool
47884
47808
-
fMet
CAT
[ENA]
¡û
>WENV181617835
OGMB01001577
[OGMB] metagenome; Human gut stool
2778
2854
+
fMet
CAT
[ENA]
¡û
>WENV181662309
OGOG01034884
[OGOG] human gut metagenome; faeces
977
901
-
fMet
CAT
[ENA]
¡û
>WENV181684879
OGOV01035679
[OGOV] human gut metagenome; faeces
273
349
+
fMet
CAT
[ENA]
¡û
>WENV181729271
OGQB01003357
[OGQB] human gut metagenome; faeces
4778
4702
-
fMet
CAT
[ENA]
¡û
>WENV181743820
OGQL01042811
[OGQL] human gut metagenome; faeces
413
489
+
fMet
CAT
[ENA]
¡û
>WENV181789629
OGRO01028440
[OGRO] human gut metagenome; faeces
1790
1714
-
fMet
CAT
[ENA]
¡û
>WENV181795866
OGRT01001453
[OGRT] human gut metagenome; faeces
2710
2786
+
fMet
CAT
[ENA]
¡û
>WENV181799955
OGRY01008828
[OGRY] human gut metagenome; faeces
340
416
+
fMet
CAT
[ENA]
¡û
>WENV181828141
OGUM01061443
[OGUM] human gut metagenome; faeces
11
87
+
fMet
CAT
[ENA]
¡û
>WENV181833985
OGUQ01021087
[OGUQ] metagenome; Human gut stool
148
224
+
fMet
CAT
[ENA]
¡û
>WENV181901842
OGXW01006398
[OGXW] human gut metagenome; faeces
805
881
+
fMet
CAT
[ENA]
¡û
>WENV181912502
OGYE01000032
[OGYE] human gut metagenome; faeces
24024
24100
+
fMet
CAT
[ENA]
¡û
>WENV182018201
OHBW01038604
[OHBW] human gut metagenome; feces
251
327
+
fMet
CAT
[ENA]
¡û
>WENV182075414
OHFR01000731
[OHFR] human gut metagenome; feces
45
121
+
fMet
CAT
[ENA]
¡û
>WENV182327662
OHZB01000327
[OHZB] human gut metagenome; feces
12035
11960
-
fMet
CAT
[ENA]
¡û
>WENV182332869
OHZK01001254
[OHZK] human gut metagenome; feces
1550
1626
+
fMet
CAT
[ENA]
¡û
>WENV182341306
OIAF01024535
[OIAF] human gut metagenome; feces
96
20
-
fMet
CAT
[ENA]
¡û
>WENV182356008
OIBQ01003134
[OIBQ] human gut metagenome; feces
2286
2210
-
fMet
CAT
[ENA]
¡û
>WENV182511034
OIWK01013374
[OIWK] human gut metagenome; faeces
1979
1903
-
fMet
CAT
[ENA]
¡û
>WENV182514571
OIWM01013721
[OIWM] human gut metagenome; faeces
2799
2723
-
fMet
CAT
[ENA]
¡û
>WENV182526541
OIWT01027676
[OIWT] human gut metagenome; faeces
1417
1493
+
fMet
CAT
[ENA]
¡û
>WENV182536464
OIXH01000705
[OIXH] human gut metagenome; faeces
6944
7020
+
fMet
CAT
[ENA]
¡û
>WENV182638129
OJLA01007857
[OJLA] metagenome; faeces
505
429
-
fMet
CAT
[ENA]
¡û
>WENV182648408
OJMG01000033
[OJMG] human gut metagenome; feces
123746
123670
-
fMet
CAT
[ENA]
¡û
>W141263759
CCDM010000002
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
105695
105771
+
Met
CAT
[ENA]
¡û
>W141263774
CCDM010000004
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
385413
385337
-
Met
CAT
[ENA]
¡û
>W141263795
CCDM010000006
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
2474
2550
+
Met
CAT
[ENA]
¡û
>WENV182665256
OJNH01000087
[OJNH] human gut metagenome; feces
54503
54427
-
fMet
CAT
[ENA]
¡û
>WENV182686916
OJNZ01073458
[OJNZ] human gut metagenome; human gut
161
85
-
fMet
CAT
[ENA]
¡û
>WENV182736693
OJQH01008928
[OJQH] human gut metagenome; stool sample
541
465
-
fMet
CAT
[ENA]
¡û
>WENV182780046
OJSD01030691
[OJSD] human gut metagenome; human gut
1002
1078
+
fMet
CAT
[ENA]
¡û
>WENV182873561
OKRW01000680
[OKRW] human gut metagenome; faeces
20090
20166
+
fMet
CAT
[ENA]
¡û
>WENV182876917
OKRY01001991
[OKRY] human gut metagenome; faeces
109
185
+
fMet
CAT
[ENA]
¡û
>WENV182897185
OKSO01032608
[OKSO] human gut metagenome; feces
135
59
-
fMet
CAT
[ENA]
¡û
>WENV182972918
OKXI01111085
[OKXI] human gut metagenome; human gut
285
361
+
fMet
CAT
[ENA]
¡û
>WENV183030304
OLFX01000027
[OLFX] human gut metagenome; faeces
96489
96565
+
fMet
CAT
[ENA]
¡û
>WENV183034090
OLFY01040234
[OLFY] human gut metagenome; faeces
213
289
+
fMet
CAT
[ENA]
¡û
>WENV183038606
OLGB01000840
[OLGB] human gut metagenome; faeces
6937
7013
+
fMet
CAT
[ENA]
¡û
>WENV183041493
OLGD01000827
[OLGD] human gut metagenome; faeces
51080
51004
-
fMet
CAT
[ENA]
¡û
>WENV183113730
OLNP01032106
[OLNP] human gut metagenome; faeces
99
23
-
fMet
CAT
[ENA]
¡û
>WENV183120306
OLNU01000967
[OLNU] human gut metagenome; faeces
16883
16807
-
fMet
CAT
[ENA]
¡û
>WENV183126509
OLNY01016313
[OLNY] human gut metagenome; faeces
2866
2790
-
fMet
CAT
[ENA]
¡û
>WENV183128810
OLNZ01021568
[OLNZ] human gut metagenome; faeces
1783
1859
+
fMet
CAT
[ENA]
¡û
>WENV183131398
OLOA01036092
[OLOA] human gut metagenome; faeces
1156
1080
-
fMet
CAT
[ENA]
¡û
>WENV183137975
OLOH01000304
[OLOH] human gut metagenome; faeces
13236
13312
+
fMet
CAT
[ENA]
¡û
>WENV183140427
OLOI01037436
[OLOI] human gut metagenome; faeces
736
812
+
fMet
CAT
[ENA]
¡û
>WENV183141941
OLOJ01032559
[OLOJ] human gut metagenome; faeces
1065
1141
+
fMet
CAT
[ENA]
¡û
>WENV183146152
OLOM01003888
[OLOM] human gut metagenome; faeces
443
519
+
fMet
CAT
[ENA]
¡û
>WENV183156679
OLOS01019804
[OLOS] human gut metagenome; faeces
167
91
-
fMet
CAT
[ENA]
¡û
>WENV183161605
OLOV01010976
[OLOV] human gut metagenome; faeces
1898
1822
-
fMet
CAT
[ENA]
¡û
>WENV183164308
OLOX01000083
[OLOX] human gut metagenome; faeces
4723
4799
+
fMet
CAT
[ENA]
¡û
>WENV183172708
OLPC01054115
[OLPC] human gut metagenome; faeces
98
174
+
fMet
CAT
[ENA]
¡û
>WENV183176869
OLPG01000011
[OLPG] human gut metagenome; faeces
79402
79326
-
fMet
CAT
[ENA]
¡û
>WENV183182073
OLPI01088029
[OLPI] human gut metagenome; faeces
445
521
+
fMet
CAT
[ENA]
¡û
>WENV183187347
OLPO01014239
[OLPO] human gut metagenome; faeces
1653
1729
+
fMet
CAT
[ENA]
¡û
>WENV183198925
OLPV01007693
[OLPV] human gut metagenome; faeces
4807
4731
-
fMet
CAT
[ENA]
¡û
>WENV183201046
OLPW01009596
[OLPW] human gut metagenome; faeces
4019
3943
-
fMet
CAT
[ENA]
¡û
>WENV183213009
OLQD01016035
[OLQD] human gut metagenome; faeces
1191
1115
-
fMet
CAT
[ENA]
¡û
>WENV183226018
OLQO01000506
[OLQO] human gut metagenome; faeces
27143
27067
-
fMet
CAT
[ENA]
¡û
>WENV183231064
OLQT01024846
[OLQT] human gut metagenome; faeces
188
112
-
fMet
CAT
[ENA]
¡û
>WENV183231878
OLQU01001093
[OLQU] human gut metagenome; faeces
12620
12544
-
fMet
CAT
[ENA]
¡û
>WENV183239481
OLRA01000801
[OLRA] human gut metagenome; faeces
36572
36648
+
fMet
CAT
[ENA]
¡û
>WENV183254234
OLRJ01001593
[OLRJ] human gut metagenome; faeces
4792
4868
+
fMet
CAT
[ENA]
¡û
>WENV183261209
OLRP01011816
[OLRP] human gut metagenome; faeces
1368
1444
+
fMet
CAT
[ENA]
¡û
>WENV183266826
OLRT01013216
[OLRT] human gut metagenome; faeces
1901
1977
+
fMet
CAT
[ENA]
¡û
>WENV183284611
OLSD01033600
[OLSD] human gut metagenome; faeces
85
9
-
fMet
CAT
[ENA]
¡û
>WENV183290074
OLSG01064032
[OLSG] human gut metagenome; faeces
51
127
+
fMet
CAT
[ENA]
¡û
>WENV183299777
OLSN01024793
[OLSN] human gut metagenome; faeces
604
528
-
fMet
CAT
[ENA]
¡û
>WENV183302198
OLSP01008310
[OLSP] human gut metagenome; faeces
1787
1863
+
fMet
CAT
[ENA]
¡û
>WENV183328528
OLWA01017135
[OLWA] human gut metagenome; faeces
484
560
+
fMet
CAT
[ENA]
¡û
>WENV183328569
OLWA01019365
[OLWA] human gut metagenome; faeces
231
307
+
fMet
CAT
[ENA]
¡û
>WENV183329389
OLWB01000239
[OLWB] human gut metagenome; faeces
22829
22905
+
fMet
CAT
[ENA]
¡û
>WENV183365209
OLXN01002712
[OLXN] human gut metagenome; feces
770
694
-
fMet
CAT
[ENA]
¡û
>WENV183371024
OLXV01004605
[OLXV] human gut metagenome; feces
2587
2663
+
fMet
CAT
[ENA]
¡û
>WENV183453396
OMDD01035295
[OMDD] human gut metagenome; feces
73
-1
-
fMet
CAT
[ENA]
¡û
>WENV170058662
CDZH01018751
[CDZH] gut metagenome; human stools
1305
1381
+
Met
CAT
[ENA]
¡û
>WENV170708398
LNAP01078091
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
33
109
+
Met
CAT
[ENA]
¡û
>C151089939
CP012034
Bacillota
Companilactobacillus ginsenosidimutans EMML 3041 [CP012034]
872176
872101
-
Met
CAT
[Ensembl]
¡û
>W2010271135
CABKTI020000002
Bacillota
Oceanobacillus jeddahense [CABKTI]
105695
105771
+
fMet
CAT
[ENA]
¡û
>W2010271150
CABKTI020000004
Bacillota
Oceanobacillus jeddahense [CABKTI]
385413
385337
-
fMet
CAT
[ENA]
¡û
>W2010271171
CABKTI020000006
Bacillota
Oceanobacillus jeddahense [CABKTI]
2474
2550
+
fMet
CAT
[ENA]
¡û
>W2010425482
FYEQ01000007
Bacillota
Bacillus sp. BO [FYEQ]
261217
261293
+
fMet
CAT
[ENA]
¡û
>W2010666993
JACBYC010000048
Bacillota
Gemella sp. GH3 [JACBYC]
790
717
-
fMet
CAT
[ENA]
¡û
>W2010667159
JACBYF010000016
Bacillota
Gemella palaticanis CIP 106318 [JACBYF]
29343
29270
-
fMet
CAT
[ENA]
¡û
>W2110030894
BMLW01000019
Bacillota
Oceanobacillus neutriphilus CGMCC 1.7693 [BMLW]
108
184
+
fMet
CAT
[ENA]
¡û
>W2110066246
BORN01000026
Bacillota
Oceanobacillus oncorhynchi subsp. incaldanensis J18TS1 [BORN]
148
224
+
fMet
CAT
[ENA]
¡û
>W2110066300
BORN01000097
Bacillota
Oceanobacillus oncorhynchi subsp. incaldanensis J18TS1 [BORN]
116
40
-
fMet
CAT
[ENA]
¡û
>W2110316587
JADGKK010000048
Bacillota
Gemella sp. GH3.1 [JADGKK]
790
717
-
fMet
CAT
[ENA]
¡û
>W2110316753
JADGKN010000016
Bacillota
Gemella palaticanis CIP106318T.1 [JADGKN]
29343
29270
-
fMet
CAT
[ENA]
¡û
>W2110317072
JADGKU010000003
Bacillota
Gemella sp. 19428wG2_WT2a [JADGKU]
1407
1480
+
fMet
CAT
[ENA]
¡û
>W2110317089
JADGKU010000003
Bacillota
Gemella sp. 19428wG2_WT2a [JADGKU]
3275
3348
+
fMet
CAT
[ENA]
¡û
>W2110318233
JADGLY010000290
Bacillota
Streptococcus danieliae 5_7CXCR22O2_S5 [JADGLY]
102
175
+
fMet
CAT
[ENA]
¡û
>W2110460820
JAFBEA010000005
Bacillota
Virgibacillus halotolerans DSM 25060 [JAFBEA]
284939
284863
-
fMet
CAT
[ENA]
¡û
>W2110460842
JAFBEA010000011
Bacillota
Virgibacillus halotolerans DSM 25060 [JAFBEA]
149288
149212
-
fMet
CAT
[ENA]
¡û
>W2110606847
JAHKEI010000032
Bacillota
Gemella sp. zg-1178 [JAHKEI]
7908
7835
-
fMet
CAT
[ENA]
¡û
>C211174862
CP063304
Bacillota
Blautia sp. LZLJ-3 [CP063304]
15319
15392
+
fMet
CAT
-
¡û
>C211345342
CP076443
Bacillota
Gemella sp. zg-570 [CP076443]
148289
148362
+
fMet
CAT
-
¡û
>W1510071260
CDGG01000001
Bacillota
Oceanobacillus oncorhynchi Oc5 [CDGG]
3107107
3107183
+
Met
CAT
[ENA]
¡û
>C231443696
CP101913
Bacillota
Oceanobacillus oncorhynchi QA-1986 526 [CP101913]
316108
316184
+
fMet
CAT
-
¡û
>C231443721
CP101913
Bacillota
Oceanobacillus oncorhynchi QA-1986 526 [CP101913]
1820150
1820226
+
fMet
CAT
-
¡û
>C231443766
CP101914
Bacillota
Oceanobacillus jeddahense QA-1986 374 [CP101914]
362613
362689
+
fMet
CAT
-
¡û
>C231443785
CP101914
Bacillota
Oceanobacillus jeddahense QA-1986 374 [CP101914]
1184303
1184379
+
fMet
CAT
-
¡û
>C231443791
CP101914
Bacillota
Oceanobacillus jeddahense QA-1986 374 [CP101914]
1784861
1784937
+
fMet
CAT
-
¡û
>C243001365
CP041364
Bacillota
Schleiferilactobacillus harbinensis NSMJ42 [CP041364]
449203
449278
+
fMet
CAT
-
¡û
>WENV085910
BABD01031920
Gut microbiome of Human (healthy human sample In-D, Adult, Male)
191
115
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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