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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183596 (48 seq.)
>W1711283065
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
152854
152780
-
Glu
TTC
[ENA]
¡û
>W1711283115
LZOG01000172
Spirochaetota
Brachyspira hampsonii [LZOG]
9163
9237
+
Glu
TTC
[ENA]
¡û
>W1711307495
MAOX01000030
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
17656
17582
-
Glu
TTC
[ENA]
¡û
>W1711307517
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
131740
131666
-
Glu
TTC
[ENA]
¡û
>W1711351546
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
545580
545654
+
Glu
TTC
[ENA]
¡û
>W131093663
AOMM01000480
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
5590
5664
+
Glu
TTC
[ENA]
¡û
>W131184516
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
91034
90960
-
Glu
TTC
[ENA]
¡û
>W1711507060
MKXF01000036
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
18184
18258
+
Glu
TTC
[ENA]
¡û
>WENV180116979
OARB01002172
[OARB] human gut metagenome; ENVO:feces
311
385
+
Glu
TTC
[ENA]
¢þ
>WENV180117769
OARM01000059
[OARM] human gut metagenome; ENVO:feces
63089
63015
-
Glu
TTC
[ENA]
¢þ
>W141037640
ALNZ01000027
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
28273
28347
+
Glu
TTC
[ENA]
¡û
>WENV181705952
OGPK01071108
[OGPK] human gut metagenome; faeces
348
274
-
Glu
TTC
[ENA]
¢þ
>W141275713
JADF01000002
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
46664
46738
+
Glu
TTC
[ENA]
¡û
>WENV182965287
OKWR01058718
[OKWR] human gut metagenome; human gut
219
293
+
Glu
TTC
[ENA]
¢þ
>WENV183384210
OLYN01001525
[OLYN] human gut metagenome; feces
10508
10582
+
Glu
TTC
[ENA]
¢þ
>WENV183423746
OMBG01006616
[OMBG] human gut metagenome; feces
2520
2594
+
Glu
TTC
[ENA]
¢þ
>WENV183651824
OQVU01005483
[OQVU] human gut metagenome; human gut
3298
3224
-
Glu
TTC
[ENA]
¢þ
>C181038083
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
873666
873592
-
Glu
TTC
-
¡û
>C191017007
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
682767
682693
-
Glu
TTC
-
¡û
>W1910000020
AFQM01000035
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
67500
67574
+
Glu
TTC
[ENA]
¡û
>C09102351
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1115406
1115332
-
Glu
TTC
[Ensembl]
¡û
>W1910569200
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1135630
1135704
+
Glu
TTC
[ENA]
¡û
>C10101968
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
448710
448784
+
Glu
TTC
[Ensembl]
¡û
>C11103108
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1018046
1018120
+
Glu
TTC
[Ensembl]
¡û
>W1510641504
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1942135
1942061
-
Glu
TTC
[ENA]
¡û
>W1511506954
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
93414
93340
-
Glu
TTC
[ENA]
¡û
>W1511506967
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
132246
132172
-
Glu
TTC
[ENA]
¡û
>W1511507003
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
91947
91873
-
Glu
TTC
[ENA]
¡û
>W1511507042
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
93852
93778
-
Glu
TTC
[ENA]
¡û
>W1511507070
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
32460
32534
+
Glu
TTC
[ENA]
¡û
>W1511507098
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
91294
91220
-
Glu
TTC
[ENA]
¡û
>W1511507145
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
32668
32742
+
Glu
TTC
[ENA]
¡û
>W1511507160
JXNH01000025
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
90682
90608
-
Glu
TTC
[ENA]
¡û
>W1511507199
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
44413
44487
+
Glu
TTC
[ENA]
¡û
>W1511507233
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
195800
195874
+
Glu
TTC
[ENA]
¡û
>W1511507258
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
7666
7740
+
Glu
TTC
[ENA]
¡û
>W1511507301
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
31461
31535
+
Glu
TTC
[ENA]
¡û
>W1511507338
JXNM01000104
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
48995
48921
-
Glu
TTC
[ENA]
¡û
>W1511507351
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
88425
88351
-
Glu
TTC
[ENA]
¡û
>W1511507377
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
121069
121143
+
Glu
TTC
[ENA]
¡û
>W1511507412
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
90886
90812
-
Glu
TTC
[ENA]
¡û
>W1511507441
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
7748
7822
+
Glu
TTC
[ENA]
¡û
>W1511507499
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
92439
92365
-
Glu
TTC
[ENA]
¡û
>W1511507514
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
82801
82875
+
Glu
TTC
[ENA]
¡û
>C161092128
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2608407
2608481
+
Glu
TTC
[Ensembl]
¡û
>C131001506
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
215030
214956
-
Glu
TTC
[Ensembl]
¡û
>C131003835
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1019891
1019817
-
Glu
TTC
[Ensembl]
¡û
>C131019656
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1880711
1880785
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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