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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183768 (75 seq.)
>W1711048744
LRPY01000177
Fusobacteriota
Fusobacterium nucleatum [LRPY]
594
670
+
Met
CAT
[ENA]
¡û
>W1711111000
LTWB01000021
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
14823
14899
+
Met
CAT
[ENA]
¡û
>C009483
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
86105
86029
-
Met
CAT
[Ensembl]
¡û
>WENV180506915
OCAS01036036
[OCAS] human gut metagenome; faeces
11
87
+
fMet
CAT
[ENA]
¢þ
>WENV180697915
ODDE01010495
[ODDE] human metagenome; G_DNA_Supragingival plaque
1457
1381
-
fMet
CAT
[ENA]
¢þ
>WENV180717650
ODGE01000407
[ODGE] human metagenome; G_DNA_Buccal mucosa
7699
7775
+
fMet
CAT
[ENA]
¢þ
>WENV180721665
ODGL01005245
[ODGL] human metagenome; G_DNA_Subgingival plaque
1310
1234
-
fMet
CAT
[ENA]
¢þ
>WENV180734899
ODGZ01033563
[ODGZ] human metagenome; G_DNA_Supragingival plaque
853
777
-
fMet
CAT
[ENA]
¢þ
>WENV180764916
ODIB01005329
[ODIB] human metagenome; G_DNA_Supragingival plaque
121
45
-
fMet
CAT
[ENA]
¢þ
>WENV180773770
ODIJ01002083
[ODIJ] human metagenome; G_DNA_Tongue dorsum
444
368
-
fMet
CAT
[ENA]
¢þ
>WENV180783021
ODIQ01001015
[ODIQ] human metagenome; G_DNA_Tongue dorsum
5192
5268
+
fMet
CAT
[ENA]
¢þ
>W141078947
ATKD01000012
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
100
24
-
Met
CAT
[ENA]
¡û
>W141078979
ATKE01000034
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
51117
51193
+
Met
CAT
[ENA]
¡û
>WENV180820786
ODJR01042631
[ODJR] human metagenome; G_DNA_Tongue dorsum
154
78
-
fMet
CAT
[ENA]
¢þ
>WENV180830801
ODKB01013901
[ODKB] human metagenome; G_DNA_Tongue dorsum
774
698
-
fMet
CAT
[ENA]
¢þ
>WENV180842609
ODKM01079418
[ODKM] human metagenome; G_DNA_Buccal mucosa
16
92
+
fMet
CAT
[ENA]
¢þ
>WENV180852571
ODKW01002014
[ODKW] human metagenome; G_DNA_Tongue dorsum
497
421
-
fMet
CAT
[ENA]
¢þ
>WENV180854711
ODKX01009332
[ODKX] human metagenome; G_DNA_Tongue dorsum
1080
1156
+
fMet
CAT
[ENA]
¢þ
>WENV180858209
ODLC01001835
[ODLC] human metagenome; G_DNA_Tongue dorsum
776
700
-
fMet
CAT
[ENA]
¢þ
>WENV180889393
ODMN01038926
[ODMN] human metagenome; G_DNA_Supragingival plaque
104
180
+
fMet
CAT
[ENA]
¢þ
>WENV180897673
ODNI01053518
[ODNI] human metagenome; G_DNA_Tongue dorsum
265
189
-
fMet
CAT
[ENA]
¢þ
>WENV180902310
ODOK01037542
[ODOK] human metagenome; G_DNA_Tongue dorsum
135
211
+
fMet
CAT
[ENA]
¢þ
>WENV180945909
ODUD01000665
[ODUD] human metagenome; G_DNA_Tongue dorsum
9005
9081
+
fMet
CAT
[ENA]
¢þ
>WENV180949955
ODUG01058586
[ODUG] human metagenome; G_DNA_Tongue dorsum
203
279
+
fMet
CAT
[ENA]
¢þ
>WENV180975973
ODUY01035656
[ODUY] human metagenome; G_DNA_Supragingival plaque
655
731
+
fMet
CAT
[ENA]
¢þ
>WENV180987507
ODVK01033367
[ODVK] human metagenome; G_DNA_Supragingival plaque
102
178
+
fMet
CAT
[ENA]
¢þ
>WENV181005959
ODWA01000265
[ODWA] human metagenome; G_DNA_Buccal mucosa
17043
16967
-
fMet
CAT
[ENA]
¢þ
>WENV181027691
ODXD01029820
[ODXD] human metagenome; G_DNA_Buccal mucosa
412
488
+
fMet
CAT
[ENA]
¢þ
>WENV181045747
ODXW01001445
[ODXW] human metagenome; G_DNA_Tongue dorsum
448
372
-
fMet
CAT
[ENA]
¢þ
>WENV181051587
ODYE01000389
[ODYE] human metagenome; G_DNA_Tongue dorsum
7387
7311
-
fMet
CAT
[ENA]
¢þ
>WENV181057887
ODYL01001667
[ODYL] human metagenome; G_DNA_Tongue dorsum
4536
4612
+
fMet
CAT
[ENA]
¢þ
>WENV181067146
ODZI01007954
[ODZI] human metagenome; G_DNA_Supragingival plaque
2738
2814
+
fMet
CAT
[ENA]
¢þ
>WENV181078095
OEAQ01003496
[OEAQ] human metagenome; G_DNA_Buccal mucosa
154
78
-
fMet
CAT
[ENA]
¢þ
>WENV181085136
OEAX01001887
[OEAX] human metagenome; G_DNA_Tongue dorsum
7414
7490
+
fMet
CAT
[ENA]
¢þ
>WENV181092109
OEBC01241035
[OEBC] human metagenome; G_DNA_Supragingival plaque
178
102
-
fMet
CAT
[ENA]
¢þ
>WENV181112609
OEEL01001660
[OEEL] human metagenome; G_DNA_Tongue dorsum
8751
8827
+
fMet
CAT
[ENA]
¢þ
>WENV181120219
OEFJ01010993
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
175
251
+
fMet
CAT
[ENA]
¢þ
>WENV181135692
OEGG01097466
[OEGG] human metagenome; G_DNA_Tongue dorsum
105
181
+
fMet
CAT
[ENA]
¢þ
>WENV181158978
OEIH01025704
[OEIH] human metagenome; G_DNA_Supragingival plaque
759
683
-
fMet
CAT
[ENA]
¢þ
>WENV181471470
OGEW01013262
[OGEW] metagenome; Human gut stool
155
79
-
fMet
CAT
[ENA]
¢þ
>WENV181510661
OGGR01001045
[OGGR] metagenome; Human gut stool
155
79
-
fMet
CAT
[ENA]
¢þ
>WENV181559658
OGIZ01013235
[OGIZ] metagenome; Human gut stool
589
665
+
fMet
CAT
[ENA]
¢þ
>WENV181581266
OGKA01003685
[OGKA] metagenome; Human gut stool
2966
3042
+
fMet
CAT
[ENA]
¢þ
>W141157842
AXNU01000004
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
10356
10280
-
Met
CAT
[ENA]
¡û
>W141157927
AXNW01000005
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
10157
10081
-
Met
CAT
[ENA]
¡û
>W141157970
AXNX01000003
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
10029
9953
-
Met
CAT
[ENA]
¡û
>W141158068
AXNZ01000005
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
9953
9877
-
Met
CAT
[ENA]
¡û
>W141221298
AZYU01000259
Fusobacteriota
Fusobacterium sp. CM21 [AZYU]
711
635
-
Met
CAT
[ENA]
¡û
>W141284890
JANB01000059
Fusobacteriota
Fusobacterium sp. CM1 [JANB]
895
819
-
Met
CAT
[ENA]
¡û
>C181058918
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
409571
409495
-
Met
CAT
-
¡û
>C181104213
CP024703
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2305 [CP024703]
1531452
1531528
+
Met
CAT
-
¡û
>W09118704
ACDF01000050
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
89999
90075
+
Met
CAT
[ENA]
¡û
>W09119355
ACDS01000224
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
9995
9919
-
Met
CAT
[ENA]
¡û
>W1910212551
FMJA01000006
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
217928
217852
-
Met
CAT
[ENA]
¡û
>W1910942331
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
227878
227954
+
Met
CAT
[ENA]
¡û
>W1911160057
NPNC01000022
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
16327
16251
-
Met
CAT
[ENA]
¡û
>W1911160113
NPND01000021
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
16249
16173
-
Met
CAT
[ENA]
¡û
>W1911431720
NXMD01000044
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
1037
961
-
Met
CAT
[ENA]
¡û
>W1911596352
PNHC01000004
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
148976
148900
-
Met
CAT
[ENA]
¡û
>C151016809
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
2197420
2197344
-
Met
CAT
[Ensembl]
¡û
>C151016856
CP007065
Fusobacteriota
Fusobacterium vincentii 3_1_27 [CP007064, CP007065]
182612
182536
-
Met
CAT
[Ensembl]
¡û
>C151097722
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
355328
355404
+
Met
CAT
-
¡û
>C151097769
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
179516
179592
+
Met
CAT
-
¡û
>C151097798
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
118984
119060
+
Met
CAT
-
¡û
>W10103300
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14194
14270
+
Met
CAT
[ENA]
¡û
>W11103456
ACQE01000155
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
14194
14270
+
Met
CAT
[ENA]
¡û
>W11106140
ACUO01000020
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
42225
42149
-
Met
CAT
[ENA]
¡û
>W11115185
ADEE01000012
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
69349
69425
+
Met
CAT
[ENA]
¡û
>W11171104
AFQD01000095
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
12134
12058
-
Met
CAT
[ENA]
¡û
>W121009374
AGEH01000025
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
37377
37453
+
Met
CAT
[ENA]
¡û
>W121076744
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
2011517
2011441
-
Met
CAT
[ENA]
¡û
>W121077400
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
391366
391290
-
Met
CAT
[ENA]
¡û
>W121119293
ALVD01000011
Fusobacteriota
Fusobacterium hwasookii ChDC F128 [ALVD]
25609
25533
-
Met
CAT
[ENA]
¡û
>C131005515
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
2014132
2014056
-
Met
CAT
[Ensembl]
¡û
>W1610889873
LRPY01000177
Fusobacteriota
Fusobacterium nucleatum [LRPY]
594
670
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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