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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183798 (71 seq.)
>W131055569
ANBY01000088
Bacillota
Staphylococcus sp. E463 [ANBY]
280
204
-
Arg
ACG
[ENA]
¡û
>WENV180697294
ODDD01008183
[ODDD] human metagenome; G_DNA_Posterior fornix
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180700213
ODDN01008183
[ODDN] human metagenome; G_DNA_Buccal mucosa
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180706354
ODEN01008183
[ODEN] human metagenome; G_DNA_Posterior fornix
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180899113
ODOA01008183
[ODOA] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903362
ODOU01008183
[ODOU] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903610
ODOY01008183
[ODOY] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903920
ODPD01008183
[ODPD] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180906742
ODPR01008183
[ODPR] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180907548
ODQE01008183
[ODQE] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180909757
ODQP01008183
[ODQP] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180911741
ODRV01008183
[ODRV] human metagenome; G_DNA_Buccal mucosa
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180911865
ODRX01008183
[ODRX] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180966881
ODUS01000034
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
1003
929
-
Arg
ACG
[ENA]
¢þ
>WENV181071378
OEAK01008183
[OEAK] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV181328402
OFLT01000285
[OFLT] metagenome; faeces
3
77
+
Arg
ACG
[ENA]
¢þ
>WENV181328431
OFLT01000487
[OFLT] metagenome; faeces
354
278
-
Arg
ACG
[ENA]
¢þ
>WENV182796933
OJSS01000245
[OJSS] human gut metagenome; human gut
4470
4544
+
Arg
ACG
[ENA]
¢þ
>WENV182807952
OJWA01000592
[OJWA] human gut metagenome; human gut
585
659
+
Arg
ACG
[ENA]
¢þ
>WENV182818252
OJZR01000062
[OJZR] human gut metagenome; human gut
740
664
-
Arg
ACG
[ENA]
¢þ
>WENV182837655
OKGK01000945
[OKGK] human gut metagenome; human gut
178
252
+
Arg
ACG
[ENA]
¢þ
>WENV182858452
OKOE01000204
[OKOE] human gut metagenome; human gut
5919
5993
+
Arg
ACG
[ENA]
¢þ
>WENV183090832
OLKE01123499
[OLKE] metagenome; surface
339
413
+
Arg
ACG
[ENA]
¢þ
>C181018871
CP016157
Bacillota
Staphylococcus simulans MR2 [CP016157]
1124323
1124397
+
Arg
ACG
-
¡û
>C181018902
CP016157
Bacillota
Staphylococcus simulans MR2 [CP016157]
2482421
2482345
-
Arg
ACG
-
¡û
>C181045397
CP020618
Bacillota
Staphylococcus hominis subsp. hominis K1 [CP020618]
2102264
2102188
-
Arg
ACG
-
¡û
>C191003664
AP018586
Bacillota
Staphylococcus caprae JMUB590 [AP018586]
1099966
1100040
+
Arg
ACG
-
¡û
>C191003698
AP018586
Bacillota
Staphylococcus caprae JMUB590 [AP018586]
2445522
2445448
-
Arg
ACG
-
¡û
>C191203294
LR134269
Bacillota
Staphylococcus warneri NCTC11044 [LR134269]
2220706
2220630
-
Arg
ACG
-
¡û
>W09126151
ACJC01000042
Bacillota
Staphylococcus epidermidis W23144 [ACJC]
206
282
+
Arg
ACG
[ENA]
¡û
>W09133683
ACPZ01000055
Bacillota
Staphylococcus warneri L37603 [ACPZ]
37918
37994
+
Arg
ACG
[ENA]
¡û
>W1910641881
LUBH01000065
Bacillota
Staphylococcus epidermidis SE45 [LUBH]
304
378
+
Arg
ACG
[ENA]
¡û
>W1910641899
LUBH01000074
Bacillota
Staphylococcus epidermidis SE45 [LUBH]
301
225
-
Arg
ACG
[ENA]
¡û
>W1910642183
LUBO01000030
Bacillota
Staphylococcus epidermidis SE37 [LUBO]
512
436
-
Arg
ACG
[ENA]
¡û
>W1910642191
LUBO01000089
Bacillota
Staphylococcus epidermidis SE37 [LUBO]
303
377
+
Arg
ACG
[ENA]
¡û
>W1910758832
MLXK01000004
Bacillota
Staphylococcus epidermidis VSE54 [MLXK]
301
225
-
Arg
ACG
[ENA]
¡û
>W1910758864
MLXK01000061
Bacillota
Staphylococcus epidermidis VSE54 [MLXK]
1835
1761
-
Arg
ACG
[ENA]
¡û
>W1910795505
MRZL01000001
Bacillota
Staphylococcus simulans 19 [MRZL]
943225
943151
-
Arg
ACG
[ENA]
¡û
>W1910795547
MRZL01000013
Bacillota
Staphylococcus simulans 19 [MRZL]
26474
26550
+
Arg
ACG
[ENA]
¡û
>W1911137754
NOWK01000018
Bacillota
Staphylococcus epidermidis P15-107 [NOWK]
2741
2665
-
Arg
ACG
[ENA]
¡û
>W1911137763
NOWK01000021
Bacillota
Staphylococcus epidermidis P15-107 [NOWK]
951
1025
+
Arg
ACG
[ENA]
¡û
>W1911616405
PPQG01000056
Bacillota
Staphylococcus epidermidis NCTC 11047 [PPQG]
329
253
-
Arg
ACG
[ENA]
¡û
>W1911616416
PPQG01000062
Bacillota
Staphylococcus epidermidis NCTC 11047 [PPQG]
577
651
+
Arg
ACG
[ENA]
¡û
>W1911617725
PPRE01000170
Bacillota
Staphylococcus carnosus subsp. utilis DSM 11676 [PPRE]
622
696
+
Arg
ACG
[ENA]
¡û
>W1911617735
PPRE01000242
Bacillota
Staphylococcus carnosus subsp. utilis DSM 11676 [PPRE]
551
627
+
Arg
ACG
[ENA]
¡û
>W1510596560
CUCO01000019
Bacillota
Staphylococcus haemolyticus 4·î26Æü [CUCO]
38550
38626
+
Arg
ACG
[ENA]
¡û
>W1510600148
CUFA01000068
Bacillota
Staphylococcus haemolyticus 95671 [CUFA]
435
359
-
Arg
ACG
[ENA]
¡û
>W1510600299
CUFD01000024
Bacillota
Staphylococcus haemolyticus 6035 [CUFD]
38377
38453
+
Arg
ACG
[ENA]
¡û
>W1510600743
CUFM01000023
Bacillota
Staphylococcus haemolyticus CN1234 [CUFM]
1981
1905
-
Arg
ACG
[ENA]
¡û
>W1510601696
CUGD01000024
Bacillota
Staphylococcus haemolyticus 127925 [CUGD]
41413
41489
+
Arg
ACG
[ENA]
¡û
>W1510601859
CUGG01000024
Bacillota
Staphylococcus haemolyticus 113101 [CUGG]
38348
38424
+
Arg
ACG
[ENA]
¡û
>W1510602672
CUGU01000021
Bacillota
Staphylococcus haemolyticus 103709 [CUGU]
5495
5419
-
Arg
ACG
[ENA]
¡û
>W1511312621
JPRW01000084
Bacillota
Staphylococcus haemolyticus C10A [JPRW]
6799
6875
+
Arg
ACG
[ENA]
¡û
>W1511438537
JUMM01000085
Bacillota
Staphylococcus epidermidis 946_SEPI [JUMM]
75
1
-
Arg
ACG
[ENA]
¡û
>W1511439422
JUNS01000077
Bacillota
Staphylococcus epidermidis 92_SEPI [JUNS]
249
173
-
Arg
ACG
[ENA]
¡û
>W1511440151
JUOU01000026
Bacillota
Staphylococcus epidermidis 899_SEPI [JUOU]
188
262
+
Arg
ACG
[ENA]
¡û
>W1511442367
JURP01000019
Bacillota
Staphylococcus epidermidis 819_SEPI [JURP]
188
262
+
Arg
ACG
[ENA]
¡û
>W1511442868
JUSH01000046
Bacillota
Staphylococcus epidermidis 801_SEPI [JUSH]
188
262
+
Arg
ACG
[ENA]
¡û
>W1511448453
JUZV01000017
Bacillota
Staphylococcus capitis 619_SEPI [JUZV]
242
166
-
Arg
ACG
[ENA]
¡û
>W1511474407
JWBR01000518
Bacillota
Staphylococcus epidermidis 114_SEPI [JWBR]
189
265
+
Arg
ACG
[ENA]
¡û
>W1511521647
JYAQ01000004
Bacillota
Staphylococcus sp. FDAARGOS_39 NRS178 [JYAQ]
338793
338869
+
Arg
ACG
[ENA]
¡û
>W1511552395
JZUK01000026
Bacillota
Staphylococcus epidermidis NGS-ED-1107 [JZUK]
404
328
-
Arg
ACG
[ENA]
¡û
>W1511552404
JZUK01000037
Bacillota
Staphylococcus epidermidis NGS-ED-1107 [JZUK]
652
726
+
Arg
ACG
[ENA]
¡û
>W1511552433
JZUL01000012
Bacillota
Staphylococcus epidermidis NGS-ED-1109 [JZUL]
74397
74323
-
Arg
ACG
[ENA]
¡û
>W1511552465
JZUL01000018
Bacillota
Staphylococcus epidermidis NGS-ED-1109 [JZUL]
408
332
-
Arg
ACG
[ENA]
¡û
>W121082138
AKGI01000005
Bacillota
Staphylococcus epidermidis NIHLM095 [AKGI]
1772
1698
-
Arg
ACG
[ENA]
¡û
>W121082182
AKGI01000031
Bacillota
Staphylococcus epidermidis NIHLM095 [AKGI]
39760
39836
+
Arg
ACG
[ENA]
¡û
>W121082191
AKGJ01000007
Bacillota
Staphylococcus epidermidis NIHLM088 [AKGJ]
688
762
+
Arg
ACG
[ENA]
¡û
>W121082246
AKGJ01000051
Bacillota
Staphylococcus epidermidis NIHLM088 [AKGJ]
417
493
+
Arg
ACG
[ENA]
¡û
>W121082661
AKGR01000006
Bacillota
Staphylococcus epidermidis NIHLM040 [AKGR]
559
485
-
Arg
ACG
[ENA]
¡û
>W121082700
AKGR01000049
Bacillota
Staphylococcus epidermidis NIHLM040 [AKGR]
657
581
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK