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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183816 (34 seq.)
>WENV180400601
OBRI01018344
[OBRI] human gut metagenome; ENVO:feces
120
204
+
Tyr
GTA
[ENA]
¢þ
>WENV181844748
OGVW01025957
[OGVW] freshwater metagenome; freshwater
169
253
+
Tyr
GTA
[ENA]
¢þ
>C08000250
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1541504
1541588
+
Tyr
GTA
[Ensembl]
¡û
>C08000273
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1898158
1898077
-
Tyr
GTA
[Ensembl]
¡û
>WENV170658344
JTFP01090478
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
237
153
-
Tyr
GTA
[ENA]
¢þ
>C181225247
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1541498
1541582
+
Tyr
GTA
-
¡û
>C181225270
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1898151
1898067
-
Tyr
GTA
-
¡û
>C191084427
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1864228
1864312
+
Tyr
GTA
-
¡û
>C191084440
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2417308
2417224
-
Tyr
GTA
-
¡û
>C191178290
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1851855
1851771
-
Tyr
GTA
-
¡û
>C191178301
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1030565
1030481
-
Tyr
GTA
-
¡û
>C141005628
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1495895
1495979
+
Tyr
GTA
[Ensembl]
¡û
>C141005651
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1773185
1773101
-
Tyr
GTA
[Ensembl]
¡û
>W1910810935
MUXF01000019
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
222671
222755
+
Tyr
GTA
[ENA]
¡û
>W1910810942
MUXF01000024
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
33942
33858
-
Tyr
GTA
[ENA]
¡û
>W1911200280
NREP01000009
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
148218
148134
-
Tyr
GTA
[ENA]
¡û
>W1911200286
NREP01000011
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
128509
128425
-
Tyr
GTA
[ENA]
¡û
>W1911426318
NXIG01000004
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
205393
205309
-
Tyr
GTA
[ENA]
¡û
>W1911426345
NXIG01000016
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
37792
37708
-
Tyr
GTA
[ENA]
¡û
>W1911426388
NXIH01000017
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
34659
34743
+
Tyr
GTA
[ENA]
¡û
>W1911746044
QVQX01000007
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
14211
14295
+
Tyr
GTA
[ENA]
¡û
>W1911746062
QVQX01000017
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
15139
15055
-
Tyr
GTA
[ENA]
¡û
>W1911775174
QXMK01000005
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
17715
17799
+
Tyr
GTA
[ENA]
¡û
>W1911775192
QXMK01000014
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
15128
15044
-
Tyr
GTA
[ENA]
¡û
>W1911775361
QXNB01000005
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
22210
22294
+
Tyr
GTA
[ENA]
¡û
>W1911775384
QXNB01000019
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
16224
16308
+
Tyr
GTA
[ENA]
¡û
>C11100371
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1464500
1464584
+
Tyr
GTA
[Ensembl]
¡û
>C11100394
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1776265
1776181
-
Tyr
GTA
[Ensembl]
¡û
>C11101047
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2034858
2034942
+
Tyr
GTA
[Ensembl]
¡û
>W1510763012
JAIW01000018
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
15635
15551
-
Tyr
GTA
[ENA]
¡û
>W11143300
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
18039
17955
-
Tyr
GTA
[ENA]
¡û
>W11143312
AEPT01000065
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
17618
17702
+
Tyr
GTA
[ENA]
¡û
>W11167755
AFNL01000014
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
11067
11151
+
Tyr
GTA
[ENA]
¡û
>W11167778
AFNL01000071
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
15310
15226
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK