This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183879 (37 seq.)
>W1711342438
MCHF01000006
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
136
212
+
Ile
GAT
[ENA]
¡û
>W1711428564
MIHH01000082
Bacillota
Moorella thermoacetica [MIHH]
134
210
+
Ile
GAT
[ENA]
¡û
>W131237171
AUMW01000035
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
21258
21182
-
Ile
GAT
[ENA]
¡û
>W141088284
AUUR01000090
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
4077
4001
-
Ile
GAT
[ENA]
¡û
>WENV181795118
OGRS01022383
[OGRS] human gut metagenome; faeces
113
189
+
Ile
GAT
[ENA]
¢þ
>W141246586
CANE01000062
Bacillota
Dehalobacter restrictus E1 [CANE]
582
506
-
Ile
GAT
[ENA]
¡û
>W141246619
CANF01000062
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
9
85
+
Ile
GAT
[ENA]
¡û
>WENV183552575
OOBJ01012919
[OOBJ] human gut metagenome; human gut
2216
2140
-
Ile
GAT
[ENA]
¢þ
>WENV170412281
CEUK01020466
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
326
402
+
Ile
GAT
[ENA]
¢þ
>WENV170561084
CZCA01002695
[CZCA] anaerobic digester metagenome; anaerobic digester
1826
1902
+
Ile
GAT
[ENA]
¢þ
>WENV170562424
CZCB01002710
[CZCB] anaerobic digester metagenome; anaerobic digester
574
650
+
Ile
GAT
[ENA]
¢þ
>WENV170644050
JMBV01028013
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
289
365
+
Ile
GAT
[ENA]
¢þ
>WENV170644131
JMBV01043842
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
116
40
-
Ile
GAT
[ENA]
¢þ
>WENV170644304
JMBW01005171
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1147
1223
+
Ile
GAT
[ENA]
¢þ
>WENV170645112
JMBX01005081
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
166
90
-
Ile
GAT
[ENA]
¢þ
>C191138236
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
3061196
3061120
-
Ile
GAT
-
¡û
>C141011729
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
337058
337134
+
Ile
GAT
[Ensembl]
¡û
>W1911159573
NPMN01000040
Bacillota
Tissierella sp. P1 [NPMN]
1501
1577
+
Ile
GAT
[ENA]
¡û
>W1911608721
PNXX01000019
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
349
273
-
Ile
GAT
[ENA]
¡û
>W1911613576
POSF01000022
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
1501
1577
+
Ile
GAT
[ENA]
¡û
>W1810888849
QURG01000049
Bacillota
Aeribacillus pallidus W-12 [QURG]
15711
15636
-
Ile
GAT
[ENA]
¡û
>C151016299
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
93723
93799
+
Ile
GAT
[Ensembl]
¡û
>C151094344
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
149319
149395
+
Ile
GAT
-
¡û
>C151094394
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
149318
149394
+
Ile
GAT
-
¡û
>W1510725104
CXYU01000015
Bacillota
Clostridiales bacterium mt11 [CXYU]
1974
2050
+
Ile
GAT
[ENA]
¡û
>C11120620
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
287702
287778
+
Ile
GAT
[Ensembl]
¡û
>C11120657
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2164676
2164600
-
Ile
GAT
[Ensembl]
¡û
>W11137354
AEHM01000001
Bacillota
Bacillus subtilis gtP20b [AEHM]
11454
11530
+
Ile
GAT
[ENA]
¡û
>W11137357
AEHM01000002
Bacillota
Bacillus subtilis gtP20b [AEHM]
17113
17189
+
Ile
GAT
[ENA]
¡û
>W11177278
AGAF01000200
Bacillota
Desulfosporosinus sp. OT [AGAF]
217
141
-
Ile
GAT
[ENA]
¡û
>W11181439
AGJB01000035
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
214
290
+
Ile
GAT
[ENA]
¡û
>W121005174
AFSI01000004
Bacillota
Bacillus mojavensis RO-H-1 [AFSI]
208609
208685
+
Ile
GAT
[ENA]
¡û
>W121063990
AJLV01000003
Bacillota
Bacillus licheniformis 10-1-A [AJLV]
108
184
+
Ile
GAT
[ENA]
¡û
>C131008553
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1959852
1959776
-
Ile
GAT
[Ensembl]
¡û
>C131008604
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1989633
1989557
-
Ile
GAT
[Ensembl]
¡û
>W1710526236
FNKD01000004
Bacillota
Virgibacillus salinus [FNKD]
295112
295187
+
Ile
GAT
[ENA]
¡û
>W1710528476
FNNG01000002
Bacillota
Tepidimicrobium xylanilyticum [FNNG]
404942
404866
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK