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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184015 (26 seq.)
>W131167550
ARDJ01000009
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
4545
4621
+
His
GTG
[ENA]
¡û
>C007110
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
413218
413294
+
His
GTG
[Ensembl]
¡û
>w018977
AATV01000029
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
22908
22830
-
His
GTG
[ENA]
¡û
>w010179
AAKQ01000005
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
72794
72716
-
His
GTG
[ENA]
¡û
>WENV180633665
OCRA01043010
[OCRA] human gut metagenome; human gut
222
148
-
His
GTG
[ENA]
¢þ
>WENV180649722
OCSK01123129
[OCSK] human gut metagenome; human gut
275
201
-
His
GTG
[ENA]
¢þ
>WENV180762648
ODHZ01246500
[ODHZ] human metagenome; G_DNA_Stool
1
75
+
His
GTG
[ENA]
¢þ
>WENV181728312
OGQA01040084
[OGQA] human gut metagenome; faeces
1083
1159
+
His
GTG
[ENA]
¢þ
>W141251465
CBQO010000012
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
44139
44215
+
His
GTG
[ENA]
¡û
>C08010938
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
574702
574778
+
His
GTG
[Ensembl]
¡û
>W09100465
AABG04000042
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
1447
1523
+
His
GTG
[ENA]
¡û
>W09135676
ACVX01000046
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
20585
20661
+
His
GTG
[ENA]
¡û
>W09135868
ACXP01000030
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
22163
22087
-
His
GTG
[ENA]
¡û
>W1911496632
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1807255
1807331
+
His
GTG
[ENA]
¡û
>W1911572344
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2223476
2223400
-
His
GTG
[ENA]
¡û
>C11106496
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2217938
2217862
-
His
GTG
[Ensembl]
¡û
>C161060805
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2223476
2223400
-
His
GTG
-
¡û
>C161076014
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
674663
674739
+
His
GTG
[Ensembl]
¡û
>C161076063
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
688206
688282
+
His
GTG
[Ensembl]
¡û
>C161097557
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2222788
2222712
-
His
GTG
-
¡û
>W121061299
AJGS01000043
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
303
227
-
His
GTG
[ENA]
¡û
>W121061356
AJGT01000025
Bacillota
Acetivibrio thermocellus YS [AJGT]
286
210
-
His
GTG
[ENA]
¡û
>W1610043708
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
126
202
+
His
GTG
[ENA]
¡û
>C131011031
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
677983
678059
+
His
GTG
-
¡û
>C131011897
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
677870
677946
+
His
GTG
-
¡û
>W1710040868
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
126
202
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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