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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184032 (48 seq.)
>W1711072486
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
125439
125515
+
Arg
TCT
[ENA]
¡û
>W1711072775
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
128072
127996
-
Arg
TCT
[ENA]
¡û
>W1711073958
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
38379
38455
+
Arg
TCT
[ENA]
¡û
>W1711073960
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5792
5716
-
Arg
TCT
[ENA]
¡û
>W1711075248
LSKG01000033
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
55435
55511
+
Arg
TCT
[ENA]
¡û
>W1711075364
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
28756
28832
+
Arg
TCT
[ENA]
¡û
>W1711075366
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
39997
39921
-
Arg
TCT
[ENA]
¡û
>W1711075662
LSKP01000054
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
5743
5667
-
Arg
TCT
[ENA]
¡û
>W1711437767
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
764328
764404
+
Arg
TCT
[ENA]
¡û
>W1711501647
MKRW01000028
Alphaproteobacteria
Alphaproteobacteria bacterium 62-8 [MKRW]
18809
18733
-
Arg
TCT
[ENA]
¡û
>C171075873
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
1157057
1157133
+
Arg
TCT
-
¡û
>WENV180020270
FTCZ01000835
[FTCZ] metagenome; soil
231970
231894
-
Arg
TCT
[ENA]
¡û
>WENV180020678
FTCZ01008224
[FTCZ] metagenome; soil
5885
5809
-
Arg
TCT
[ENA]
¡û
>WENV180029535
FTJK01011528
[FTJK] metagenome; soil
535
611
+
Arg
TCT
[ENA]
¡û
>WENV180030068
FTJL01118683
[FTJL] metagenome; soil
1166
1242
+
Arg
TCT
[ENA]
¡û
>WENV180343834
OBLK01108586
[OBLK] soil metagenome; Clay
279
355
+
Arg
TCT
[ENA]
¡û
>WENV181165947
OEIS01316374
[OEIS] soil metagenome; soil
106
30
-
Arg
TCT
[ENA]
¡û
>WENV181295880
OFHJ01001494
[OFHJ] soil metagenome; Clay
4599
4523
-
Arg
TCT
[ENA]
¡û
>WENV183092536
OLLF01000326
[OLLF] soil metagenome; soil
8455
8531
+
Arg
TCT
[ENA]
¡û
>WENV170553114
CXWK01008154
[CXWK] wastewater metagenome; activated sludge
4294
4218
-
Arg
TCT
[ENA]
¡û
>WENV170650948
JRYE01081360
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
81
157
+
Arg
TCT
[ENA]
¡û
>WENV170711883
LNFM01008042
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5740
5816
+
Arg
TCT
[ENA]
¡û
>W1910182475
BJMX01000011
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
2726
2650
-
Arg
TCT
[ENA]
¡û
>W1810109386
PHHF01000026
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
87747
87671
-
Arg
TCT
[ENA]
¡û
>W2010096090
BJMX01000011
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
2726
2650
-
Arg
TCT
[ENA]
¡û
>W2010713023
JACHOV010000007
Alphaproteobacteria
Rhizorhapis suberifaciens DSM 7465 [JACHOV]
187911
187835
-
Arg
TCT
[ENA]
¡û
>W2011670400
SPHY01000003
Alphaproteobacteria
Sphingomonas sp. ZLT-5 [SPHY]
22256
22332
+
Arg
TCT
[ENA]
¡û
>W2110081131
CAIKZO010000011
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIKZO]
100043
100119
+
Arg
TCT
[ENA]
¡û
>W2110089498
CAIXEC010000693
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIXEC]
1667
1591
-
Arg
TCT
[ENA]
¡û
>W2110090420
CAIYJG010000074
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIYJG]
23961
24037
+
Arg
TCT
[ENA]
¡û
>W2110663586
JAHXZS010000001
Alphaproteobacteria
Aquisediminimonas sediminicola CH68-4 [JAHXZS]
1178995
1178919
-
Arg
TCT
[ENA]
¡û
>C231486638
CP104207
Alphaproteobacteria
Sphingopyxis sp. PET50 [CP104207]
2558459
2558383
-
Arg
TCT
-
¡û
>C241273073
CP126889
Alphaproteobacteria
Enhydrobacter sp. [CP126889]
4708056
4708132
+
Arg
TCT
-
¡û
>C11124252
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
278819
278743
-
Arg
TCT
[Ensembl]
¡û
>W11167340
AFMP01000014
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
89885
89809
-
Arg
TCT
[ENA]
¡û
>C131011854
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
2744685
2744761
+
Arg
TCT
[Ensembl]
¡û
>W1610911746
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
125439
125515
+
Arg
TCT
[ENA]
¡û
>W1610912035
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
128072
127996
-
Arg
TCT
[ENA]
¡û
>W1610912342
LSIE01000046
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
960
884
-
Arg
TCT
[ENA]
¡û
>W1610913263
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
38379
38455
+
Arg
TCT
[ENA]
¡û
>W1610913265
LSJC01000006
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
5792
5716
-
Arg
TCT
[ENA]
¡û
>W1610914425
LSKD01000026
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
28762
28838
+
Arg
TCT
[ENA]
¡û
>W1610914553
LSKG01000033
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
55435
55511
+
Arg
TCT
[ENA]
¡û
>W1610914669
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
28756
28832
+
Arg
TCT
[ENA]
¡û
>W1610914671
LSKI01000167
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
39997
39921
-
Arg
TCT
[ENA]
¡û
>W1610914910
LSKO01001220
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
14299
14223
-
Arg
TCT
[ENA]
¡û
>W1610914967
LSKP01000054
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
5743
5667
-
Arg
TCT
[ENA]
¡û
>W1710600351
FUWJ01000001
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
1456106
1456030
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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