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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184114 (10 seq.)
>WENV181206667
OFAW01001344
[OFAW] metagenome; hydrothermal vent
216
293
+
Glu
TTC
[ENA]
¡û
>WENV181207106
OFAY01000625
[OFAY] metagenome; hydrothermal vent
2452
2375
-
Glu
TTC
[ENA]
¡û
>WENV181207476
OFAZ01000788
[OFAZ] metagenome; hydrothermal vent
569
492
-
Glu
TTC
[ENA]
¡û
>WENV181208082
OFBA01019065
[OFBA] metagenome; hydrothermal vent
370
293
-
Glu
TTC
[ENA]
¡û
>WENV181208218
OFBB01000658
[OFBB] metagenome; hydrothermal vent
3284
3361
+
Glu
TTC
[ENA]
¡û
>WENV181208663
OFBC01001233
[OFBC] metagenome; hydrothermal vent
2515
2438
-
Glu
TTC
[ENA]
¡û
>WENV181213604
OFBV01012414
[OFBV] metagenome; hydrothermal vent
698
775
+
Glu
TTC
[ENA]
¡û
>WENV181214055
OFBW01008442
[OFBW] metagenome; hydrothermal vent
635
712
+
Glu
TTC
[ENA]
¡û
>WENV181223788
OFDD01000318
[OFDD] metagenome; hydrothermal vent
3487
3410
-
Glu
TTC
[ENA]
¡û
>WENV181225556
OFDI01008237
[OFDI] metagenome; hydrothermal vent
272
195
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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