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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184114 (74 seq.)
>WENV180204091
OBAH01000011
[OBAH] human gut metagenome; human gut
192836
192760
-
His
GTG
[ENA]
¢þ
>WENV180328042
OBKU01000432
[OBKU] human gut metagenome; human gut
19229
19153
-
His
GTG
[ENA]
¢þ
>WENV180335782
OBLG01000246
[OBLG] human gut metagenome; human gut
48168
48092
-
His
GTG
[ENA]
¢þ
>WENV180545913
OCIU01000178
[OCIU] human gut metagenome; human gut
48087
48011
-
His
GTG
[ENA]
¢þ
>WENV180615722
OCPZ01016842
[OCPZ] human gut metagenome; human gut
263
187
-
His
GTG
[ENA]
¢þ
>WENV180827553
ODKA01000463
[ODKA] human metagenome; G_DNA_Stool
30657
30581
-
His
GTG
[ENA]
¢þ
>WENV180893321
ODMR01004625
[ODMR] human metagenome; G_DNA_Stool
887
811
-
His
GTG
[ENA]
¢þ
>W141088546
AUVG01000012
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
78673
78749
+
His
GTG
[ENA]
¡û
>WENV181336295
OFMD01000246
[OFMD] human gut metagenome; human gut
257
181
-
His
GTG
[ENA]
¢þ
>WENV181345670
OFML01000437
[OFML] human gut metagenome; human gut
123
199
+
His
GTG
[ENA]
¢þ
>WENV181354907
OFMT01000099
[OFMT] human gut metagenome; human gut
2512
2436
-
His
GTG
[ENA]
¢þ
>WENV181359349
OFMX01000078
[OFMX] human gut metagenome; human gut
201
277
+
His
GTG
[ENA]
¢þ
>WENV181425357
OGCQ01000362
[OGCQ] human gut metagenome; human gut
18716
18792
+
His
GTG
[ENA]
¢þ
>WENV181454742
OGEE01000011
[OGEE] metagenome; Human gut stool
157639
157563
-
His
GTG
[ENA]
¢þ
>WENV181467692
OGER01025672
[OGER] metagenome; Human gut stool
144
220
+
His
GTG
[ENA]
¢þ
>WENV181528291
OGHL01000087
[OGHL] metagenome; Human gut stool
48090
48014
-
His
GTG
[ENA]
¢þ
>WENV181538573
OGHY01023921
[OGHY] metagenome; Human gut stool
1238
1162
-
His
GTG
[ENA]
¢þ
>WENV181625578
OGML01001146
[OGML] metagenome; Human gut stool
15337
15261
-
His
GTG
[ENA]
¢þ
>WENV181787847
OGRO01000085
[OGRO] human gut metagenome; faeces
66404
66480
+
His
GTG
[ENA]
¢þ
>WENV181832849
OGUQ01000001
[OGUQ] metagenome; Human gut stool
106972
106896
-
His
GTG
[ENA]
¢þ
>WENV181903506
OGXX01001432
[OGXX] human gut metagenome; faeces
2735
2659
-
His
GTG
[ENA]
¢þ
>WENV181940728
OGYY01000172
[OGYY] human gut metagenome; faeces
18618
18694
+
His
GTG
[ENA]
¢þ
>WENV181950131
OGZG01000256
[OGZG] human gut metagenome; faeces
13865
13941
+
His
GTG
[ENA]
¢þ
>WENV182015684
OHBR01010657
[OHBR] human gut metagenome; feces
179
103
-
His
GTG
[ENA]
¢þ
>WENV182066021
OHFB01001230
[OHFB] human gut metagenome; feces
6336
6412
+
His
GTG
[ENA]
¢þ
>WENV182070412
OHFI01011117
[OHFI] human gut metagenome; feces
231
155
-
His
GTG
[ENA]
¢þ
>WENV182134224
OHKH01001543
[OHKH] human gut metagenome; feces
5126
5050
-
His
GTG
[ENA]
¢þ
>WENV182167325
OHMS01000031
[OHMS] human gut metagenome; feces
67889
67965
+
His
GTG
[ENA]
¢þ
>WENV182243489
OHSI01000671
[OHSI] human gut metagenome; feces
2080
2004
-
His
GTG
[ENA]
¢þ
>WENV182244347
OHSJ01000093
[OHSJ] human gut metagenome; feces
13393
13469
+
His
GTG
[ENA]
¢þ
>WENV182256832
OHTF01000224
[OHTF] human gut metagenome; feces
13401
13325
-
His
GTG
[ENA]
¢þ
>WENV182266104
OHTX01013953
[OHTX] human gut metagenome; feces
17
93
+
His
GTG
[ENA]
¢þ
>WENV182268480
OHUB01000841
[OHUB] human gut metagenome; feces
6605
6529
-
His
GTG
[ENA]
¢þ
>WENV182273755
OHUJ01004227
[OHUJ] human gut metagenome; feces
3287
3211
-
His
GTG
[ENA]
¢þ
>WENV182301063
OHWR01000273
[OHWR] human gut metagenome; feces
6123
6047
-
His
GTG
[ENA]
¢þ
>WENV182308026
OHXG01000149
[OHXG] human gut metagenome; feces
18000
18076
+
His
GTG
[ENA]
¢þ
>WENV182318729
OHYG01000003
[OHYG] human gut metagenome; feces
264338
264262
-
His
GTG
[ENA]
¢þ
>WENV182355195
OIBP01000199
[OIBP] human gut metagenome; feces
11908
11832
-
His
GTG
[ENA]
¢þ
>WENV182358431
OIBW01000006
[OIBW] human gut metagenome; feces
13314
13390
+
His
GTG
[ENA]
¢þ
>WENV182368204
OICM01016917
[OICM] human gut metagenome; feces
585
661
+
His
GTG
[ENA]
¢þ
>WENV182377149
OIDF01000769
[OIDF] human gut metagenome; feces
695
619
-
His
GTG
[ENA]
¢þ
>WENV182630480
OJKW01000469
[OJKW] metagenome; faeces
18681
18757
+
His
GTG
[ENA]
¢þ
>WENV182663509
OJMO01014739
[OJMO] human gut metagenome; feces
835
759
-
His
GTG
[ENA]
¢þ
>WENV182689148
OJOD01000022
[OJOD] human gut metagenome; stool sample
18780
18856
+
His
GTG
[ENA]
¢þ
>WENV182708530
OJPA01000204
[OJPA] human gut metagenome; stool sample
17951
17875
-
His
GTG
[ENA]
¢þ
>WENV182713798
OJPG01004044
[OJPG] human gut metagenome; stool sample
4476
4552
+
His
GTG
[ENA]
¢þ
>WENV182885203
OKSC01003537
[OKSC] human gut metagenome; faeces
9811
9887
+
His
GTG
[ENA]
¢þ
>WENV182905631
OKTC01000511
[OKTC] human gut metagenome; feces
3025
3101
+
His
GTG
[ENA]
¢þ
>WENV183293059
OLSK01000008
[OLSK] human gut metagenome; faeces
18614
18690
+
His
GTG
[ENA]
¢þ
>WENV183295927
OLSL01006086
[OLSL] human gut metagenome; faeces
6363
6287
-
His
GTG
[ENA]
¢þ
>WENV183319104
OLVV01000022
[OLVV] human gut metagenome; feces
26317
26393
+
His
GTG
[ENA]
¢þ
>WENV183333154
OLWE01000021
[OLWE] human gut metagenome; feces
26317
26393
+
His
GTG
[ENA]
¢þ
>WENV183346023
OLWS01000170
[OLWS] human gut metagenome; feces
37074
37150
+
His
GTG
[ENA]
¢þ
>WENV183349603
OLWW01001707
[OLWW] human gut metagenome; feces
1109
1033
-
His
GTG
[ENA]
¢þ
>WENV183351875
OLWZ01000878
[OLWZ] human gut metagenome; feces
14006
13930
-
His
GTG
[ENA]
¢þ
>WENV183399152
OLZQ01000515
[OLZQ] human gut metagenome; feces
2079
2003
-
His
GTG
[ENA]
¢þ
>WENV183417523
OMAV01002245
[OMAV] human gut metagenome; feces
1416
1340
-
His
GTG
[ENA]
¢þ
>WENV183425020
OMBK01000497
[OMBK] human gut metagenome; feces
18598
18674
+
His
GTG
[ENA]
¢þ
>WENV183428777
OMBO01000251
[OMBO] human gut metagenome; feces
18648
18724
+
His
GTG
[ENA]
¢þ
>WENV183446809
OMCS01000061
[OMCS] human gut metagenome; feces
59154
59230
+
His
GTG
[ENA]
¢þ
>WENV183451927
OMDC01000738
[OMDC] human gut metagenome; feces
178
254
+
His
GTG
[ENA]
¢þ
>WENV183484764
OMFP01000949
[OMFP] human gut metagenome; feces
677
601
-
His
GTG
[ENA]
¢þ
>WENV183489207
OMGA01000286
[OMGA] human gut metagenome; feces
22317
22393
+
His
GTG
[ENA]
¢þ
>WENV183598080
OODG01000014
[OODG] human gut metagenome; human gut
6669
6745
+
His
GTG
[ENA]
¢þ
>WENV183645850
OQVQ01033831
[OQVQ] human gut metagenome; human gut
539
463
-
His
GTG
[ENA]
¢þ
>C181115595
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
772513
772437
-
His
GTG
-
¡û
>C191031598
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
737694
737618
-
His
GTG
-
¡û
>C191031653
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
772514
772438
-
His
GTG
-
¡û
>C191072264
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
772525
772449
-
His
GTG
-
¡û
>C151102765
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
1534304
1534228
-
His
GTG
[Ensembl]
¡û
>W10115279
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
188675
188751
+
His
GTG
[ENA]
¡û
>C11108791
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
772512
772436
-
His
GTG
[Ensembl]
¡û
>W11118865
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
188675
188751
+
His
GTG
[ENA]
¡û
>WENV082329
BAAV01003348
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
1348
1426
+
His
GTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK