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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184116 (32 seq.)
>W1712039137
NFJL01000018
Bacillota
Blautia sp. An249 [NFJL]
65984
65909
-
Arg
TCT
[ENA]
¡û
>WENV180175512
OAWC01000102
[OAWC] human gut metagenome; faeces
78854
78928
+
Arg
TCT
[ENA]
¢þ
>WENV180240618
OBDD01027147
[OBDD] human gut metagenome; human gut
270
196
-
Arg
TCT
[ENA]
¢þ
>WENV180281326
OBIA01007659
[OBIA] human gut metagenome; human gut
54
129
+
Arg
TCT
[ENA]
¢þ
>WENV180432493
OBWI01003970
[OBWI] human gut metagenome; faeces
486
560
+
Arg
TCT
[ENA]
¢þ
>WENV180448118
OBXE01000566
[OBXE] human gut metagenome; faeces
5296
5370
+
Arg
TCT
[ENA]
¢þ
>WENV180472383
OBYQ01000308
[OBYQ] human gut metagenome; faeces
5292
5366
+
Arg
TCT
[ENA]
¢þ
>WENV180493341
OBZY01016016
[OBZY] human gut metagenome; faeces
229
304
+
Arg
TCT
[ENA]
¢þ
>WENV180542061
OCHS01053330
[OCHS] human gut metagenome; human gut
319
245
-
Arg
TCT
[ENA]
¢þ
>WENV180542093
OCHS01056429
[OCHS] human gut metagenome; human gut
295
221
-
Arg
TCT
[ENA]
¢þ
>WENV180681929
OCVV012814651
[OCVV] gut metagenome; gut
245
170
-
Arg
TCT
[ENA]
¢þ
>WENV180681931
OCVV012814651
[OCVV] gut metagenome; gut
245
170
-
Arg
TCT
[ENA]
¢þ
>W141088551
AUVG01000016
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
148854
148778
-
Arg
TCT
[ENA]
¡û
>WENV181441883
OGDN01027299
[OGDN] human gut metagenome; human gut
57
132
+
Arg
TCT
[ENA]
¢þ
>WENV182635762
OJKY01119643
[OJKY] metagenome; faeces
406
481
+
Arg
TCT
[ENA]
¢þ
>WENV183101286
OLNG01027836
[OLNG] human gut metagenome; faeces
211
286
+
Arg
TCT
[ENA]
¢þ
>WENV183583036
OOCP01008804
[OOCP] human gut metagenome; human gut
315
390
+
Arg
TCT
[ENA]
¢þ
>WENV183614023
OODU01021657
[OODU] human gut metagenome; human gut
675
750
+
Arg
TCT
[ENA]
¢þ
>WENV170688939
LFRM01268991
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
291
367
+
Arg
TCT
[ENA]
¢þ
>C181227065
LT907978
Bacillota
Anaerobutyricum hallii [LT907978]
1312474
1312549
+
Arg
TCT
-
¡û
>W141559699
JHWZ01000005
Bacillota
Lachnospiraceae bacterium P6B14 [JHWZ]
129323
129398
+
Arg
TCT
[ENA]
¡û
>W1810798659
QRNJ01000049
Bacillota
Anaerobutyricum hallii AF45-14BH [QRNJ]
212
287
+
Arg
TCT
[ENA]
¡û
>W1810825349
QSID01000015
Bacillota
Anaerobutyricum hallii AM34-3LB [QSID]
96493
96418
-
Arg
TCT
[ENA]
¡û
>W1810825350
QSID01000015
Bacillota
Anaerobutyricum hallii AM34-3LB [QSID]
96329
96254
-
Arg
TCT
[ENA]
¡û
>W1810831292
QSOE01000126
Bacillota
Anaerobutyricum hallii TM10-1AC [QSOE]
280
355
+
Arg
TCT
[ENA]
¡û
>C161076025
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
1182676
1182752
+
Arg
TCT
[Ensembl]
¡û
>C161076073
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
1187418
1187494
+
Arg
TCT
[Ensembl]
¡û
>W1610043702
BAZZ01000002
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
108754
108830
+
Arg
TCT
[ENA]
¡û
>C131011041
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
1175760
1175836
+
Arg
TCT
-
¡û
>C131011907
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
1175658
1175734
+
Arg
TCT
-
¡û
>WENV078937
AAQL01007880
Gut microbiome of Human (healthy human stool sample 8)
3766
3688
-
Arg
TCT
[ENA]
>W1710040862
BAZZ01000002
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
108754
108830
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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