This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184163 (48 seq.)
>W1710944463
LOQT01000031
Actinomycetota
Corynebacterium glutamicum [LOQT]
46817
46741
-
Met
CAT
[ENA]
¡û
>W1710944591
LOQW01000025
Actinomycetota
Corynebacterium glutamicum [LOQW]
46852
46776
-
Met
CAT
[ENA]
¡û
>W1711281843
LZMN01000007
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
1681
1607
-
Met
CAT
[ENA]
¡û
>W131156375
AQPS01000003
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
46810
46734
-
Met
CAT
[ENA]
¡û
>W131160907
AQXC01000004
Actinomycetota
Corynebacterium propinquum DSM 44285 [AQXC]
43354
43430
+
Met
CAT
[ENA]
¡û
>W131169225
AREP01000001
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
272555
272479
-
Met
CAT
[ENA]
¡û
>C005820
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
2357167
2357091
-
Met
CAT
[Ensembl]
¡û
>C171074427
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
2327263
2327187
-
Met
CAT
-
¡û
>WENV180228693
OBCD01011228
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
206
280
+
Ile2
CAT
[ENA]
¢þ
>W141026605
AKXP01000026
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
46810
46734
-
Met
CAT
[ENA]
¡û
>WENV180732124
ODGX01000310
[ODGX] human metagenome; G_DNA_Anterior nares
2982
3056
+
Ile2
CAT
[ENA]
¢þ
>WENV180917917
ODTE01006925
[ODTE] human metagenome; G_DNA_Anterior nares
502
428
-
Ile2
CAT
[ENA]
¢þ
>W141096256
AVFF01000016
Actinomycetota
Corynebacterium pseudodiphtheriticum 90104 [AVFF]
7447
7523
+
Met
CAT
[ENA]
¡û
>WENV181032226
ODXL01000515
[ODXL] human metagenome; G_DNA_Anterior nares
2429
2355
-
Ile2
CAT
[ENA]
¢þ
>WENV181131475
OEGC01000341
[OEGC] human metagenome; G_DNA_Anterior nares
5628
5554
-
Ile2
CAT
[ENA]
¢þ
>W141155033
AXLQ01000003
Actinomycetota
Corynebacterium sp. KPL1995 [AXLQ]
360803
360877
+
Met
CAT
[ENA]
¡û
>W141155078
AXLR01000004
Actinomycetota
Corynebacterium sp. KPL1989 [AXLR]
360736
360810
+
Met
CAT
[ENA]
¡û
>WENV183511423
OMJG01000279
[OMJG] food metagenome; Cotija cheese
5853
5927
+
Ile2
CAT
[ENA]
¢þ
>C181002241
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
2312520
2312446
-
Met
CAT
-
¡û
>C181064193
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
1862819
1862745
-
Met
CAT
-
¡û
>C181211282
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
1970270
1970196
-
Met
CAT
-
¡û
>C181215141
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
105469
105395
-
Met
CAT
-
¡û
>C181226217
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
570932
571006
+
Met
CAT
-
¡û
>C191163657
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
1823191
1823117
-
Met
CAT
-
¡û
>W141563836
JIAH01000005
Actinomycetota
Corynebacterium pseudodiphtheriticum DSM 44287 [JIAH]
489712
489786
+
Met
CAT
[ENA]
¡û
>W141800903
JPDH01000082
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
1811
1887
+
Met
CAT
[ENA]
¡û
>W1910001246
APJJ01000022
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
97103
97029
-
Met
CAT
[ENA]
¡û
>W1910374166
FUIB01000008
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
20778
20852
+
Met
CAT
[ENA]
¡û
>W1910442376
FWFE01000051
Actinomycetota
Corynebacterium casei JB4 [FWFE]
98239
98313
+
Met
CAT
[ENA]
¡û
>W1810058127
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
1483279
1483353
+
Met
CAT
[ENA]
¡û
>C151005924
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
1072542
1072618
+
Met
CAT
[Ensembl]
¡û
>C151084344
CP011541
Actinomycetota
Corynebacterium epidermidicanis DSM 45586 [CP011541]
1845187
1845263
+
Met
CAT
[Ensembl]
¡û
>W1511466816
JVSI01000053
Actinomycetota
Corynebacterium propinquum 149_CJEI [JVSI]
24635
24559
-
Met
CAT
[ENA]
¡û
>W1511467021
JVSN01000069
Actinomycetota
Corynebacterium propinquum 143_CAUR [JVSN]
5937
6013
+
Met
CAT
[ENA]
¡û
>W1511469847
JVVY01000004
Actinomycetota
Corynebacterium propinquum 1274_CJEI [JVVY]
1776
1700
-
Met
CAT
[ENA]
¡û
>W1511644817
LDYD01000006
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
487733
487657
-
Met
CAT
[ENA]
¡û
>W1511644868
LDYE01000003
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
401952
401878
-
Met
CAT
[ENA]
¡û
>W11176895
AFYA01000013
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
46776
46700
-
Met
CAT
[ENA]
¡û
>C161003063
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
2347170
2347094
-
Met
CAT
-
¡û
>C161003122
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
2338670
2338594
-
Met
CAT
-
¡û
>C161040466
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
2355083
2355007
-
Met
CAT
-
¡û
>C161063675
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
2306440
2306364
-
Met
CAT
[Ensembl]
¡û
>C161096094
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
2310806
2310730
-
Met
CAT
-
¡û
>W121127392
CAFW01000028
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
12664
12740
+
Met
CAT
[ENA]
¡û
>C131012048
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
2370119
2370043
-
Met
CAT
[Ensembl]
¡û
>C131012108
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
2370118
2370042
-
Met
CAT
[Ensembl]
¡û
>W1611041128
LZMN01000007
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
1681
1607
-
Met
CAT
[ENA]
¡û
>W1710552170
FOGQ01000019
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
14515
14439
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK