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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184216 (54 seq.)
>W1711009038
LQQL01000240
Bacillota
Weissella sp. DD23 [LQQL]
2302
2229
-
Lys
TTT
[ENA]
¡û
>W1711168477
LVYB01000017
Bacillota
Weissella cibaria [LVYB]
9737
9810
+
Lys
TTT
[ENA]
¡û
>W1711572615
MNBZ01000022
Bacillota
Weissella confusa [MNBZ]
56543
56616
+
Lys
TTT
[ENA]
¡û
>W1711999923
NDXJ01000016
Bacillota
Weissella cibaria [NDXJ]
98264
98191
-
Lys
TTT
[ENA]
¡û
>C171026251
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
1079073
1079000
-
Lys
TTT
-
¡û
>C171029853
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
618431
618358
-
Lys
TTT
-
¡û
>C171029939
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
628916
628843
-
Lys
TTT
-
¡û
>WENV181515716
OGGW01016122
[OGGW] metagenome; Human gut stool
589
662
+
Lys
TTT
[ENA]
¢þ
>W141240383
CAGH01000017
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
21353
21426
+
Lys
TTT
[ENA]
¡û
>WENV182611180
OJJW01024361
[OJJW] metagenome; faeces
386
313
-
Lys
TTT
[ENA]
¢þ
>WENV170659799
JXWR01120196
[JXWR] soil metagenome; rice field; ambient CO2
147
74
-
Lys
TTT
[ENA]
¢þ
>C181047657
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
1950623
1950696
+
Lys
TTT
-
¡û
>C181069730
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1110659
1110732
+
Lys
TTT
-
¡û
>C181152872
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2224049
2223976
-
Lys
TTT
-
¡û
>C191051683
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
558646
558573
-
Lys
TTT
-
¡û
>C191051766
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
528359
528286
-
Lys
TTT
-
¡û
>C191137869
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1808216
1808289
+
Lys
TTT
-
¡û
>C191188430
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
868049
868122
+
Lys
TTT
-
¡û
>W1910178042
BJEF01000001
Bacillota
Weissella cibaria JCM 12495 [BJEF]
87465
87538
+
Lys
TTT
[ENA]
¡û
>W1910401431
FUWE01000016
Bacillota
Weissella confusa AB3E41 [FUWE]
110274
110201
-
Lys
TTT
[ENA]
¡û
>W1910638437
LRRC01000015
Bacillota
Weissella cibaria 110 [LRRC]
86763
86836
+
Lys
TTT
[ENA]
¡û
>W1911634679
PVRY01000008
Bacillota
Weissella confusa CCUG 61560 [PVRY]
31811
31738
-
Lys
TTT
[ENA]
¡û
>W1911634755
PVRZ01000004
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
99177
99104
-
Lys
TTT
[ENA]
¡û
>W1911634834
PVSA01000006
Bacillota
Weissella confusa CCUG 39518 [PVSA]
103277
103204
-
Lys
TTT
[ENA]
¡û
>W1911634910
PVSB01000012
Bacillota
Weissella confusa CCUG 37938 [PVSB]
36367
36294
-
Lys
TTT
[ENA]
¡û
>W1911634986
PVSC01000003
Bacillota
Weissella confusa CCUG 36556 [PVSC]
96616
96543
-
Lys
TTT
[ENA]
¡û
>W1911635062
PVSD01000005
Bacillota
Weissella confusa CCUG 30969 [PVSD]
22675
22602
-
Lys
TTT
[ENA]
¡û
>W1911635143
PVSE01000007
Bacillota
Weissella confusa F71 [PVSE]
133687
133614
-
Lys
TTT
[ENA]
¡û
>W1911635217
PVSF01000004
Bacillota
Weissella confusa EJ61 [PVSF]
74148
74075
-
Lys
TTT
[ENA]
¡û
>W1911635299
PVSG01000007
Bacillota
Weissella confusa EJ52 [PVSG]
64960
64887
-
Lys
TTT
[ENA]
¡û
>W1911635377
PVSH01000010
Bacillota
Weissella confusa EJ12 [PVSH]
64957
64884
-
Lys
TTT
[ENA]
¡û
>W1911635452
PVSI01000011
Bacillota
Weissella confusa VTT E-163496 [PVSI]
53221
53148
-
Lys
TTT
[ENA]
¡û
>W1911635526
PVSJ01000001
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
574388
574315
-
Lys
TTT
[ENA]
¡û
>W1911635610
PVSK01000008
Bacillota
Weissella confusa VTT E-153457 [PVSK]
15537
15464
-
Lys
TTT
[ENA]
¡û
>W1911635682
PVSL01000001
Bacillota
Weissella confusa VTT E-143403 [PVSL]
574388
574315
-
Lys
TTT
[ENA]
¡û
>W1911635767
PVSM01000005
Bacillota
Weissella confusa VTT E-072748 [PVSM]
31258
31185
-
Lys
TTT
[ENA]
¡û
>W1911635846
PVSN01000020
Bacillota
Weissella confusa VTT E-062653 [PVSN]
45696
45623
-
Lys
TTT
[ENA]
¡û
>W1911635922
PVSO01000018
Bacillota
Weissella confusa VTT E-95616 [PVSO]
5597
5524
-
Lys
TTT
[ENA]
¡û
>W1911636000
PVSP01000003
Bacillota
Weissella confusa VTT E-90393 [PVSP]
131926
131853
-
Lys
TTT
[ENA]
¡û
>W1810576404
QENM01000006
Bacillota
Weissella confusa 32 [QENM]
73694
73621
-
Lys
TTT
[ENA]
¡û
>W1810816514
QSBT01000007
Bacillota
Weissella confusa AF03-13 [QSBT]
55381
55454
+
Lys
TTT
[ENA]
¡û
>W1810828816
QSKQ01000002
Bacillota
Weissella cibaria AM27-24 [QSKQ]
87736
87809
+
Lys
TTT
[ENA]
¡û
>W1810828883
QSKR01000002
Bacillota
Weissella cibaria AM27-22LB [QSKR]
329634
329561
-
Lys
TTT
[ENA]
¡û
>W1810842360
QSVX01000005
Bacillota
Weissella cibaria OF06-4 [QSVX]
87192
87265
+
Lys
TTT
[ENA]
¡û
>W1510500324
CRHY01000017
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
52486
52559
+
Lys
TTT
[ENA]
¡û
>W1511478987
JWHT01000013
Bacillota
Weissella cibaria AB3b [JWHT]
109824
109751
-
Lys
TTT
[ENA]
¡û
>W1511479072
JWHU01000012
Bacillota
Weissella cibaria MG1 [JWHU]
113294
113221
-
Lys
TTT
[ENA]
¡û
>W1511479100
JWHV01000002
Bacillota
Weissella cibaria ff3PR [JWHV]
86288
86361
+
Lys
TTT
[ENA]
¡û
>W11140008
AEKT01000033
Bacillota
Weissella cibaria KACC 11862 [AEKT]
72795
72722
-
Lys
TTT
[ENA]
¡û
>C161046804
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
1061922
1061849
-
Lys
TTT
[Ensembl]
¡û
>W1610528129
JQAY01000004
Bacillota
Weissella confusa [JQAY]
55028
55101
+
Lys
TTT
[ENA]
¡û
>W1610857558
LQQL01000240
Bacillota
Weissella sp. DD23 [LQQL]
2302
2229
-
Lys
TTT
[ENA]
¡û
>W1610978329
LVYB01000017
Bacillota
Weissella cibaria [LVYB]
9737
9810
+
Lys
TTT
[ENA]
¡û
>W1710629719
JQAY01000004
Bacillota
Weissella confusa [JQAY]
55028
55101
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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