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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18438 (87 seq.)
>W1710858007
LMAR01000001
Alphaproteobacteria
Bosea thiooxidans [LMAR]
60048
59958
-
Ser
GCT
[ENA]
¡û
>W1710869462
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19357
19267
-
Ser
GCT
[ENA]
¡û
>W1710879538
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
178444
178354
-
Ser
GCT
[ENA]
¡û
>W1710893985
LNFH01000167
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
386
296
-
Ser
GCT
[ENA]
¡û
>W1710893986
LNFH01000167
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
91
1
-
Ser
GCT
[ENA]
¡û
>W1711072947
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
355
265
-
Ser
GCT
[ENA]
¡û
>W1711073802
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41308
41218
-
Ser
GCT
[ENA]
¡û
>W1711074498
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
16115
16205
+
Ser
GCT
[ENA]
¡û
>W1711074858
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
16100
16190
+
Ser
GCT
[ENA]
¡û
>WENV180094839
MTBK01034381
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
162
72
-
Ser
GCT
[ENA]
¡û
>WENV180690583
OCZS010012544
[OCZS] soil metagenome; soil
2691
2781
+
Ser
GCT
[ENA]
¡û
>WENV181307996
OFIS01000089
[OFIS] sludge metagenome; sludge
30239
30329
+
Ser
GCT
[ENA]
¡û
>WENV181311605
OFJB01005553
[OFJB] sludge metagenome; sludge
579
669
+
Ser
GCT
[ENA]
¡û
>WENV181401900
OFTX01017928
[OFTX] sludge metagenome; sludge
461
551
+
Ser
GCT
[ENA]
¡û
>WENV181402018
OFTY01000035
[OFTY] sludge metagenome; sludge
98586
98676
+
Ser
GCT
[ENA]
¡û
>W141220775
AZYE01001660
Alphaproteobacteria
Microvirga lupini [AZYE]
6482
6392
-
Ser
GCT
[ENA]
¡û
>WENV170012020
APMI01112069
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1555
1465
-
Ser
GCT
[ENA]
¡û
>WENV170551888
CXWJ01028183
[CXWJ] wastewater metagenome; activated sludge
6575
6485
-
Ser
GCT
[ENA]
¡û
>WENV170712563
LNFM01014945
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9433
9343
-
Ser
GCT
[ENA]
¡û
>WENV170712675
LNFM01016271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10195
10285
+
Ser
GCT
[ENA]
¡û
>WENV170714577
LNFM01082937
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
92
+
Ser
GCT
[ENA]
¡û
>C181020304
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4734924
4734834
-
Ser
GCT
-
¡û
>C181063197
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3715472
3715562
+
Ser
GCT
-
¡û
>C181158526
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
1995932
1996022
+
Ser
GCT
-
¡û
>W141810189
JPUG01000052
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
76062
75972
-
Ser
GCT
[ENA]
¡û
>W1910840137
MZXT01000013
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
12460
12550
+
Ser
GCT
[ENA]
¡û
>W1911653565
QDGA01000011
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
67726
67636
-
Ser
GCT
[ENA]
¡û
>W1810463329
PZZL01000008
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
206827
206737
-
Ser
GCT
[ENA]
¡û
>W1810463390
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
56783
56693
-
Ser
GCT
[ENA]
¡û
>W1810676922
QKMI01000024
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
6170
6260
+
Ser
GCT
[ENA]
¡û
>W1810706672
QMKH01000003
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
73843
73933
+
Ser
GCT
[ENA]
¡û
>W1810735487
QOIO01000007
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
60998
61088
+
Ser
GCT
[ENA]
¡û
>W1810763424
QQBB01000005
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
418337
418247
-
Ser
GCT
[ENA]
¡û
>SRA1016231
SRR023846.410173
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
173
83
-
Ser
GCT
[SRA]
>W2010104613
BJYU01000034
Alphaproteobacteria
Microvirga aerophila NBRC 106136 [BJYU]
38262
38172
-
Ser
GCT
[ENA]
¡û
>W2010309605
CABWLL010000004
Alphaproteobacteria
Bosea sp. 125 [CABWLL]
12097
12187
+
Ser
GCT
[ENA]
¡û
>W2010310857
CABWMI010000020
Alphaproteobacteria
Bosea sp. 62 [CABWMI]
1572241
1572151
-
Ser
GCT
[ENA]
¡û
>W2010439669
JAAAXI010000002
Alphaproteobacteria
Microvirga sp. SYSU G3D207 [JAAAXI]
13962
13872
-
Ser
GCT
[ENA]
¡û
>W2010439723
JAAAXJ010000001
Alphaproteobacteria
Microvirga sp. SYSU G3D203 [JAAAXJ]
117803
117713
-
Ser
GCT
[ENA]
¡û
>W2010568000
JAATJS010000003
Alphaproteobacteria
Microvirga sp. c23x22 [JAATJS]
392984
393074
+
Ser
GCT
[ENA]
¡û
>W2010609857
JABMLM010000254
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
12894
12984
+
Ser
GCT
[ENA]
¡û
>W2010609881
JABMLM010000329
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
24708
24798
+
Ser
GCT
[ENA]
¡û
>W2010680681
JACDXJ010000001
Alphaproteobacteria
Microvirga sp. Marseille-Q2068 [JACDXJ]
3531862
3531952
+
Ser
GCT
[ENA]
¡û
>W2010700082
JACHFP010000002
Alphaproteobacteria
Bosea sp. DSM 102914 [JACHFP]
76831
76921
+
Ser
GCT
[ENA]
¡û
>W2010714682
JACHWB010000002
Alphaproteobacteria
Microvirga lupini AT3.9 [JACHWB]
88941
89031
+
Ser
GCT
[ENA]
¡û
>W2011237124
QDGA01000011
Alphaproteobacteria
Microvirga sp. CCBAU 65841 [QDGA]
67726
67636
-
Ser
GCT
[ENA]
¡û
>W2011538370
SCMY01000008
Alphaproteobacteria
Rhizobiales bacterium 2SD [SCMY]
263618
263708
+
Ser
GCT
[ENA]
¡û
>W2011647811
SNWJ01000014
Alphaproteobacteria
Bosea sp. BK498 [SNWJ]
241045
241135
+
Ser
GCT
[ENA]
¡û
>W2011770442
UBNE01000028
Alphaproteobacteria
Rhizobiales bacterium [UBNE]
170408
170318
-
Ser
GCT
[ENA]
¡û
>W2011786971
UCBZ01000012
Alphaproteobacteria
Rhizobiales bacterium [UCBZ]
69492
69582
+
Ser
GCT
[ENA]
¡û
>W2011798281
UCLR01000049
Alphaproteobacteria
Rhizobiales bacterium [UCLR]
21183
21093
-
Ser
GCT
[ENA]
¡û
>W2011976662
VCMV01000017
Alphaproteobacteria
Microvirga sp. CDVBN77 [VCMV]
26372
26462
+
Ser
GCT
[ENA]
¡û
>W2012107854
VOSJ01000016
Alphaproteobacteria
Microvirga tunisiensis M8 [VOSJ]
55874
55964
+
Ser
GCT
[ENA]
¡û
>W2012107913
VOSK01000016
Alphaproteobacteria
Microvirga tunisiensis Lmie10 [VOSK]
55874
55964
+
Ser
GCT
[ENA]
¡û
>W2110098532
CAJFDY010000018
Alphaproteobacteria
Bosea sp. 21B [CAJFDY]
21015
21105
+
Ser
GCT
[ENA]
¡û
>W2110283086
JACXAB010000019
Alphaproteobacteria
Microvirga sp. BT688 [JACXAB]
30820
30730
-
Ser
GCT
[ENA]
¡û
>W2110284852
JACXWY010000002
Alphaproteobacteria
Bosea sp. SSUT16 [JACXWY]
119275
119185
-
Ser
GCT
[ENA]
¡û
>W2110372425
JADQDN010000005
Alphaproteobacteria
Microvirga sp. BT290 [JADQDN]
248984
249074
+
Ser
GCT
[ENA]
¡û
>W2110372454
JADQDO010000001
Alphaproteobacteria
Microvirga sp. BT350 [JADQDO]
445748
445838
+
Ser
GCT
[ENA]
¡û
>W2110427298
JAELXT010000008
Alphaproteobacteria
Microvirga sp. BT325 [JAELXT]
74745
74835
+
Ser
GCT
[ENA]
¡û
>W2110439959
JAEQMY010000002
Alphaproteobacteria
Microvirga aerilata 5420S-16 [JAEQMY]
128863
128773
-
Ser
GCT
[ENA]
¡û
>W2110444856
JAERQD010000001
Alphaproteobacteria
Microvirga zambiensis WSM3693 [JAERQD]
222941
223031
+
Ser
GCT
[ENA]
¡û
>W2110444917
JAERQE010000005
Alphaproteobacteria
Microvirga soli R491 [JAERQE]
71234
71324
+
Ser
GCT
[ENA]
¡û
>W2110463000
JAFBID010000067
Alphaproteobacteria
Microvirga arabica SV2184P [JAFBID]
674
584
-
Ser
GCT
[ENA]
¡û
>W2110484123
JAFEMB010000002
Alphaproteobacteria
Microvirga sp. BT291 [JAFEMB]
246190
246280
+
Ser
GCT
[ENA]
¡û
>W2110484239
JAFEMD010000044
Alphaproteobacteria
Microvirga sp. BT689 [JAFEMD]
40058
40148
+
Ser
GCT
[ENA]
¡û
>W2110522936
JAGEML010000008
Alphaproteobacteria
Microvirga sp. 3-52 [JAGEML]
42833
42923
+
Ser
GCT
[ENA]
¡û
>W2110523020
JAGEMM010000002
Alphaproteobacteria
Microvirga sp. 3D7 [JAGEMM]
200434
200524
+
Ser
GCT
[ENA]
¡û
>W2110563264
JAGPUP010000445
Alphaproteobacteria
Microvirga sp. HBU67558 [JAGPUP]
12263
12353
+
Ser
GCT
[ENA]
¡û
>W2110584234
JAHAMK010000011
Alphaproteobacteria
Microvirga sp. 3-52 [JAHAMK]
43120
43210
+
Ser
GCT
[ENA]
¡û
>C211259057
CP069354
Alphaproteobacteria
Microvirga sp. VF16 [CP069354]
3747334
3747424
+
Ser
GCT
-
¡û
>W2110718245
JAJBBR010000008
Alphaproteobacteria
Microvirga sp. SM9 [JAJBBR]
144824
144734
-
Ser
GCT
[ENA]
¡û
>C231459521
CP102845
Alphaproteobacteria
Microvirga sp. R24 [CP102845]
3465978
3466068
+
Ser
GCT
-
¡û
>C241300887
CP132359
Alphaproteobacteria
Bosea beijingensis REN20 [CP132359]
1044619
1044709
+
Ser
GCT
-
¡û
>C241358887
CP141048
Alphaproteobacteria
Microvirga lotononidis HAMBI_3237 [CP141048]
3755956
3755866
-
Ser
GCT
-
¡û
>W121068047
AJUA01000078
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
38373
38283
-
Ser
GCT
[ENA]
¡û
>W1610731808
LMJT01000001
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
19357
19267
-
Ser
GCT
[ENA]
¡û
>W1610741884
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
178444
178354
-
Ser
GCT
[ENA]
¡û
>W1610754251
LNFH01000167
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
386
296
-
Ser
GCT
[ENA]
¡û
>W1610754252
LNFH01000167
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
91
1
-
Ser
GCT
[ENA]
¡û
>W1610912207
LSIB01000104
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
355
265
-
Ser
GCT
[ENA]
¡û
>W1610913107
LSIY01000031
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
41308
41218
-
Ser
GCT
[ENA]
¡û
>W1610913803
LSJP01000089
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
16115
16205
+
Ser
GCT
[ENA]
¡û
>W1610914163
LSJX01000189
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
16100
16190
+
Ser
GCT
[ENA]
¡û
>W1710064214
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
454586
454496
-
Ser
GCT
[ENA]
¡û
>W1710515675
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
455705
455795
+
Ser
GCT
[ENA]
¡û
>W1710603296
FUYX01000014
Alphaproteobacteria
Bosea thiooxidans [FUYX]
55976
56066
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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