This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184382 (47 seq.)
>W1710866457
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603528
603452
-
Arg
TCT
[ENA]
¡û
>W131222286
AUBD01000007
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
16811
16735
-
Arg
TCT
[ENA]
¡û
>W131226627
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
263131
263207
+
Arg
TCT
[ENA]
¡û
>W131231904
AUIV01000005
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
25611
25535
-
Arg
TCT
[ENA]
¡û
>W131244863
CAQP01000028
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
9170
9246
+
Arg
TCT
[ENA]
¡û
>W1711384942
MEDO01000002
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
49979
50055
+
Arg
TCT
[ENA]
¡û
>W1711424112
MIDT01000115
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
10133
10057
-
Arg
TCT
[ENA]
¡û
>W1711711510
MTAY01000048
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
71509
71433
-
Arg
TCT
[ENA]
¡û
>WENV180309193
OBJR01666060
[OBJR] soil metagenome; soil
194
118
-
Arg
TCT
[ENA]
¢þ
>W141094215
AVCH01000149
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
10336
10260
-
Arg
TCT
[ENA]
¡û
>W141094314
AVCJ01000051
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
98949
99025
+
Arg
TCT
[ENA]
¡û
>W141094361
AVCK01000063
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
11733
11657
-
Arg
TCT
[ENA]
¡û
>WENV181416190
OGCL01059756
[OGCL] hot springs metagenome; Hot spring water
568
644
+
Arg
TCT
[ENA]
¢þ
>WENV182401766
OIER01010860
[OIER] human gut metagenome; human gut
859
935
+
Arg
TCT
[ENA]
¢þ
>W141282835
JAJA01000018
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
32394
32470
+
Arg
TCT
[ENA]
¡û
>WENV182941702
OKVG01005491
[OKVG] human gut metagenome; human gut
2139
2215
+
Arg
TCT
[ENA]
¢þ
>WENV182944225
OKVI01008082
[OKVI] human gut metagenome; human gut
1117
1193
+
Arg
TCT
[ENA]
¢þ
>WENV170009848
APMI01003864
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
20297
20373
+
Arg
TCT
[ENA]
¢þ
>WENV170010377
APMI01015377
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
12378
12302
-
Arg
TCT
[ENA]
¢þ
>WENV170010433
APMI01017069
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
893
817
-
Arg
TCT
[ENA]
¢þ
>WENV170010558
APMI01020517
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2336
2412
+
Arg
TCT
[ENA]
¢þ
>WENV170713414
LNFM01030587
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8
84
+
Arg
TCT
[ENA]
¢þ
>WENV170989056
MWVY01073175
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
288
212
-
Arg
TCT
[ENA]
¢þ
>C181000999
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1985591
1985667
+
Arg
TCT
-
¡û
>C181081793
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2000153
2000229
+
Arg
TCT
-
¡û
>C181200070
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1817900
1817824
-
Arg
TCT
-
¡û
>C191165693
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
2191691
2191615
-
Arg
TCT
-
¡û
>C191181063
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
4015625
4015549
-
Arg
TCT
-
¡û
>C191183312
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
724837
724761
-
Arg
TCT
-
¡û
>C191189087
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2518463
2518387
-
Arg
TCT
-
¡û
>W1910749865
MJEV01000073
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MJEV]
23607
23531
-
Arg
TCT
[ENA]
¡û
>W1910826174
MWQP01000002
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
184642
184718
+
Arg
TCT
[ENA]
¡û
>W1910888081
NERH01000005
Gammaproteobacteria
Stenotrophomonas maltophilia E729 [NERH]
30651
30727
+
Arg
TCT
[ENA]
¡û
>W1911162543
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
1105109
1105033
-
Arg
TCT
[ENA]
¡û
>SRA1002312
SRR001308.369940
Metagenomic characterization of a wastewater treatment plant (SRP000180)
166
90
-
Arg
TCT
[SRA]
>W1810354832
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
28440
28364
-
Arg
TCT
[ENA]
¡û
>W1810586402
QFFI01000035
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
12490
12566
+
Arg
TCT
[ENA]
¡û
>W1810692791
QLKV01000006
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
141867
141943
+
Arg
TCT
[ENA]
¡û
>W1511594999
LBMI01000004
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
226290
226366
+
Arg
TCT
[ENA]
¡û
>C161031591
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2006694
2006770
+
Arg
TCT
[Ensembl]
¡û
>C161052045
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3823415
3823339
-
Arg
TCT
[Ensembl]
¡û
>W1610027335
AVPU01000005
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
107946
108022
+
Arg
TCT
[ENA]
¡û
>W1610728803
LMHM01000011
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
603528
603452
-
Arg
TCT
[ENA]
¡û
>W1710023569
AVPU01000005
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
107946
108022
+
Arg
TCT
[ENA]
¡û
>W1710529749
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
522770
522846
+
Arg
TCT
[ENA]
¡û
>W1710531703
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
920523
920447
-
Arg
TCT
[ENA]
¡û
>W1710582983
FQUK01000025
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
17372
17448
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK