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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18443 (33 seq.)
>W1711174175
LWDZ01000009
Gammaproteobacteria
Pseudomonas argentinensis [LWDZ]
10814
10904
+
Ser
TGA
[ENA]
¡û
>W1711178781
LWHA01000011
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
155372
155462
+
Ser
TGA
[ENA]
¡û
>W1711708761
MSXU01000009
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
618380
618470
+
Ser
TGA
[ENA]
¡û
>W1711708832
MSXV01000040
Gammaproteobacteria
Pseudomonas sp. PA15(2017) [MSXV]
999
1089
+
Ser
TGA
[ENA]
¡û
>W1711708852
MSXW01000002
Gammaproteobacteria
Pseudomonas sp. PA27(2017) [MSXW]
214184
214274
+
Ser
TGA
[ENA]
¡û
>C171101413
CP019947
Gammaproteobacteria
Pseudomonas sp. CC6-YY-74 [CP019947]
1520616
1520706
+
Ser
TGA
-
¡û
>W141217323
AZVM01000002
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
946496
946406
-
Ser
TGA
[ENA]
¡û
>W141217423
AZVO01000010
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I3 [AZVO]
595891
595801
-
Ser
TGA
[ENA]
¡û
>W1911681267
QJUH01000009
Gammaproteobacteria
Pseudomonas sp. P2A [QJUH]
131964
131874
-
Ser
TGA
[ENA]
¡û
>W1911681330
QJUI01000011
Gammaproteobacteria
Pseudomonas sp. P9A [QJUI]
131964
131874
-
Ser
TGA
[ENA]
¡û
>W1911681382
QJUJ01000006
Gammaproteobacteria
Pseudomonas sp. P18A [QJUJ]
81677
81587
-
Ser
TGA
[ENA]
¡û
>W1911681438
QJUK01000008
Gammaproteobacteria
Pseudomonas sp. P23A [QJUK]
90878
90968
+
Ser
TGA
[ENA]
¡û
>W1810685098
QKZB01000001
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I1 [QKZB]
708415
708325
-
Ser
TGA
[ENA]
¡û
>W2010607735
JABMCS010000062
Gammaproteobacteria
Pseudomonas sp. CrR14 [JABMCS]
8890
8800
-
Ser
TGA
[ENA]
¡û
>W2010667534
JACBYV010000001
Gammaproteobacteria
Pseudomonas flavescens BIGb0408 [JACBYV]
1437563
1437653
+
Ser
TGA
[ENA]
¡û
>W2011261427
QJUH01000009
Gammaproteobacteria
Pseudomonas sp. P2A [QJUH]
131964
131874
-
Ser
TGA
[ENA]
¡û
>W2011261490
QJUI01000011
Gammaproteobacteria
Pseudomonas sp. P9A [QJUI]
131964
131874
-
Ser
TGA
[ENA]
¡û
>W2011261542
QJUJ01000006
Gammaproteobacteria
Pseudomonas sp. P18A [QJUJ]
81677
81587
-
Ser
TGA
[ENA]
¡û
>W2011261598
QJUK01000008
Gammaproteobacteria
Pseudomonas sp. P23A [QJUK]
90878
90968
+
Ser
TGA
[ENA]
¡û
>W2011416708
RFLV01000002
Gammaproteobacteria
Pseudomonas sp. CCM 8849 [RFLV]
210354
210444
+
Ser
TGA
[ENA]
¡û
>W2012047261
VIVP01000013
Gammaproteobacteria
Pseudomonas sp. AG1028 [VIVP]
184123
184213
+
Ser
TGA
[ENA]
¡û
>C231077035
CP056087
Gammaproteobacteria
Pseudomonas argentinensis SA190 [CP056087]
3068624
3068714
+
Ser
TGA
-
¡û
>C231146251
CP076114
Gammaproteobacteria
Pseudomonas seleniipraecipitans D1-6 [CP076114]
259182
259092
-
Ser
TGA
-
¡û
>C231172837
CP081942
Gammaproteobacteria
Pseudomonas sp. MM211 [CP081942]
3707564
3707474
-
Ser
TGA
-
¡û
>C231176425
CP082928
Gammaproteobacteria
Pseudomonas fulva ZJU1 [CP082928]
5268924
5268834
-
Ser
TGA
-
¡û
>W2310028386
BSSG01000005
Gammaproteobacteria
Pseudomonas straminea NBRC 16640 [BSSG]
185003
185093
+
Ser
TGA
[ENA]
¡û
>C11117229
CP002727
Gammaproteobacteria
Pseudomonas fulva 12-X [CP002727]
2614451
2614361
-
Ser
TGA
[Ensembl]
¡û
>W1511509225
JXQW01000025
Gammaproteobacteria
Pseudomonas fulva MEJ086 [JXQW]
2571
2481
-
Ser
TGA
[ENA]
¡û
>W1710075751
BCZZ01000001
Gammaproteobacteria
Pseudomonas flavescens NBRC 103044 [BCZZ]
247337
247247
-
Ser
TGA
[ENA]
¡û
>W1710515089
FNBM01000007
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
18635
18545
-
Ser
TGA
[ENA]
¡û
>W1710517343
FNDG01000002
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
195649
195739
+
Ser
TGA
[ENA]
¡û
>W1710559360
FOMO01000005
Gammaproteobacteria
Pseudomonas straminea [FOMO]
184889
184979
+
Ser
TGA
[ENA]
¡û
>W1710564378
FOQL01000002
Gammaproteobacteria
Pseudomonas guineae [FOQL]
423372
423282
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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