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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18443 (13 seq.)
>W1711404552
MFYN01000059
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
18410
18500
+
Ser
CGA
[ENA]
¡û
>W1711582983
MNWP01000003
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
76529
76439
-
Ser
CGA
[ENA]
¡û
>WENV183694973
ORMF012313271
[ORMF] groundwater metagenome; groundwater
452
542
+
Ser
CGA
[ENA]
¢þ
>W1910717047
MFXR01000018
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22 [MFXR]
1840
1750
-
Ser
CGA
[ENA]
¡û
>W1910717271
MFXX01000016
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_55_24 [MFXX]
1916
1826
-
Ser
CGA
[ENA]
¡û
>W1910717327
MFXY01000049
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_54_10 [MFXY]
94
4
-
Ser
CGA
[ENA]
¡û
>W1910717477
MFYC01000052
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_54_110 [MFYC]
2446
2536
+
Ser
CGA
[ENA]
¡û
>W1910717614
MFYG01000016
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_55_15 [MFYG]
1871
1781
-
Ser
CGA
[ENA]
¡û
>C161050444
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
914627
914717
+
Ser
CGA
-
¡û
>C161050488
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
914782
914872
+
Ser
CGA
-
¡û
>C161050532
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
914713
914803
+
Ser
CGA
-
¡û
>C161050576
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
914506
914596
+
Ser
CGA
-
¡û
>C161050620
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
914781
914871
+
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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