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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184454 (6 seq.)
>WENV181231242
OFEK01015448
[OFEK] activated sludge metagenome; Anaerobic digester
1507
1431
-
His
GTG
[ENA]
¡û
>WENV170560784
CZCA01000531
[CZCA] anaerobic digester metagenome; anaerobic digester
5503
5427
-
His
GTG
[ENA]
¡û
>WENV170560874
CZCA01000869
[CZCA] anaerobic digester metagenome; anaerobic digester
12722
12798
+
His
GTG
[ENA]
¡û
>WENV170720189
LSQX01144363
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3573
3497
-
His
GTG
[ENA]
¡û
>WENV170968932
MTKW01017004
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7684
7608
-
His
GTG
[ENA]
¡û
>WENV170968991
MTKW01018419
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12605
12681
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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