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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184475 (18 seq.)
>W131108948
APGP01000053
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
48710
48634
-
Asp
GTC
[ENA]
¡û
>C006896
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1020512
1020588
+
Asp
GTC
[Ensembl]
¡û
>C025856
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1682932
1682856
-
Asp
GTC
[Ensembl]
¡û
>W141153104
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
147551
147627
+
Asp
GTC
[ENA]
¡û
>W141276460
JADV01000002
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
14773
14849
+
Asp
GTC
[ENA]
¡û
>WENV170676253
LDZR01001872
[LDZR] terrestrial metagenome; oil reservoir sample K2
10476
10552
+
Asp
GTC
[ENA]
¢þ
>C191131124
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2126772
2126696
-
Asp
GTC
-
¡û
>W09104551
AALW01000061
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
553
477
-
Asp
GTC
[ENA]
¡û
>W09135034
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
12290
12366
+
Asp
GTC
[ENA]
¡û
>W09135182
ACVK01000044
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
8984
8908
-
Asp
GTC
[ENA]
¡û
>C10113410
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1544463
1544387
-
Asp
GTC
[Ensembl]
¡û
>C10113467
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1526169
1526093
-
Asp
GTC
[Ensembl]
¡û
>C10113559
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
1382256
1382180
-
Asp
GTC
[Ensembl]
¡û
>W1511564015
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
19749
19825
+
Asp
GTC
[ENA]
¡û
>W1610043665
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6159
6235
+
Asp
GTC
[ENA]
¡û
>W1610612655
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10476
10552
+
Asp
GTC
[ENA]
¡û
>W1710040825
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6159
6235
+
Asp
GTC
[ENA]
¡û
>W1710733976
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10476
10552
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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