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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184480 (16 seq.)
>W1711505351
MKVK01000043
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
105616
105540
-
Arg
CCT
[ENA]
¡û
>W1711589346
MOEB01000018
Alphaproteobacteria
Aerophototrophica crusticola MIMtkB3 [MOEB]
59278
59354
+
Arg
CCT
[ENA]
¡û
>W131162096
AQYH01000007
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
434541
434617
+
Arg
CCT
[ENA]
¡û
>w015420
AAPC01000015
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
20976
20898
-
Arg
CCT
[ENA]
¡û
>W141151389
AXBA01000024
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
968
892
-
Arg
CCT
[ENA]
¡û
>C08011437
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
2494497
2494573
+
Arg
CCT
[Ensembl]
¡û
>W141278486
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
4343678
4343754
+
Arg
CCT
[ENA]
¡û
>WENV183742399
PJUH01024621
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
358
282
-
Arg
CCT
[ENA]
¢þ
>C181155080
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
4020520
4020444
-
Arg
CCT
-
¡û
>C181155130
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
4020520
4020444
-
Arg
CCT
-
¡û
>C191029910
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
947754
947830
+
Arg
CCT
-
¡û
>W141730046
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
741169
741245
+
Arg
CCT
[ENA]
¡û
>W1810273188
PSNV01000034
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
3115
3191
+
Arg
CCT
[ENA]
¡û
>W1810884347
QUMO01000001
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
877316
877240
-
Arg
CCT
[ENA]
¡û
>C151101057
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
4227928
4227852
-
Arg
CCT
[Ensembl]
¡û
>W1710593775
FRXO01000003
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
209341
209265
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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