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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184487 (114 seq.)
>W131182420
ARQJ01000002
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
1295
1370
+
Met
CAT
[ENA]
¡û
>W131182428
ARQJ01000012
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
35075
35150
+
Met
CAT
[ENA]
¡û
>WENV180002419
FLNY01001835
[FLNY] bioreactor metagenome; Moose rumen
5040
4965
-
fMet
CAT
[ENA]
¢þ
>WENV180724785
ODGR01002724
[ODGR] human metagenome; G_DNA_Tongue dorsum
8627
8550
-
fMet
CAT
[ENA]
¢þ
>WENV181202528
OERR01019438
[OERR] metagenome; Caecal content
158
234
+
fMet
CAT
[ENA]
¢þ
>WENV181293289
OFHG01000963
[OFHG] soil metagenome; Clay
10015
9939
-
fMet
CAT
[ENA]
¢þ
>WENV182678555
OJNS01012469
[OJNS] human gut metagenome; human gut
1975
1899
-
fMet
CAT
[ENA]
¢þ
>WENV182701756
OJOP01069560
[OJOP] human gut metagenome; human gut
622
546
-
fMet
CAT
[ENA]
¢þ
>WENV183258295
OLRN01002207
[OLRN] human gut metagenome; faeces
6678
6602
-
fMet
CAT
[ENA]
¢þ
>WENV183377683
OLYB01041359
[OLYB] human gut metagenome; feces
1168
1092
-
fMet
CAT
[ENA]
¢þ
>WENV183390423
OLZB01045041
[OLZB] human gut metagenome; feces
611
535
-
fMet
CAT
[ENA]
¢þ
>WENV183713703
PDWI01149719
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
806
881
+
fMet
CAT
[ENA]
¢þ
>C181023902
CP017156
Bacillota
Macrococcus sp. IME1552 [CP017156]
160102
160177
+
Met
CAT
-
¡û
>C181023914
CP017156
Bacillota
Macrococcus sp. IME1552 [CP017156]
212223
212296
+
Met
CAT
-
¡û
>C181178871
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
359132
359207
+
Met
CAT
-
¡û
>C181178878
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
360454
360529
+
Met
CAT
-
¡û
>C181178926
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
470125
470200
+
Met
CAT
-
¡û
>C181178933
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
471161
471236
+
Met
CAT
-
¡û
>C181179874
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
477435
477510
+
Met
CAT
-
¡û
>C181179881
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
478556
478631
+
Met
CAT
-
¡û
>C191138886
CP035309
Bacillota
Macrococcus canis KM0218 [CP035309]
1728029
1727954
-
Met
CAT
-
¡û
>C191138898
CP035309
Bacillota
Macrococcus canis KM0218 [CP035309]
1673730
1673655
-
Met
CAT
-
¡û
>W1910749385
MJBI02000006
Bacillota
Macrococcus goetzii CCM 4927 [MJBI]
72113
72038
-
Met
CAT
[ENA]
¡û
>W1910749398
MJBI02000008
Bacillota
Macrococcus goetzii CCM 4927 [MJBI]
36064
35989
-
Met
CAT
[ENA]
¡û
>W1910749439
MJBJ02000011
Bacillota
Macrococcus caseolyticus subsp. hominis CCM 7927 [MJBJ]
548
623
+
Met
CAT
[ENA]
¡û
>W1910749451
MJBJ02000011
Bacillota
Macrococcus caseolyticus subsp. hominis CCM 7927 [MJBJ]
46599
46674
+
Met
CAT
[ENA]
¡û
>W1911160256
NPNH01000002
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
157
232
+
Met
CAT
[ENA]
¡û
>W1911160291
NPNH01000015
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
357
282
-
Met
CAT
[ENA]
¡û
>C09107386
AP009484
Bacillota
Macrococcus caseolyticus JCSC5402 [AP009484]
1717995
1717920
-
Met
CAT
[Ensembl]
¡û
>C09107398
AP009484
Bacillota
Macrococcus caseolyticus JCSC5402 [AP009484]
1637218
1637143
-
Met
CAT
[Ensembl]
¡û
>W1911495285
OBMR01000016
Bacillota
Pseudobutyrivibrio ruminis DSM 9787 [OBMR]
52102
52028
-
Met
CAT
[ENA]
¡û
>W1911618170
PPRM01000104
Bacillota
Macrococcus caseolyticus DSM 20597 [PPRM]
30292
30217
-
Met
CAT
[ENA]
¡û
>W1810058622
PDKP01000001
Bacillota
Lactobacillus apis LMG 26964 [PDKP]
355
430
+
Met
CAT
[ENA]
¡û
>W1810058629
PDKP01000001
Bacillota
Lactobacillus apis LMG 26964 [PDKP]
1484
1559
+
Met
CAT
[ENA]
¡û
>W1810151876
PIWJ01000012
Bacillota
Macrococcus caseolyticus 5190_42462 [PIWJ]
11992
12067
+
Met
CAT
[ENA]
¡û
>W1810151896
PIWJ01000014
Bacillota
Macrococcus caseolyticus 5190_42462 [PIWJ]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810151937
PIWK01000019
Bacillota
Macrococcus caseolyticus 5193_2_23 [PIWK]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810151957
PIWK01000020
Bacillota
Macrococcus caseolyticus 5193_2_23 [PIWK]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152046
PIWM01000017
Bacillota
Macrococcus caseolyticus 5196_2_38 [PIWM]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810152066
PIWM01000019
Bacillota
Macrococcus caseolyticus 5196_2_38 [PIWM]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152095
PIWN01000002
Bacillota
Macrococcus caseolyticus 5197_42554 [PIWN]
173324
173249
-
Met
CAT
[ENA]
¡û
>W1810152123
PIWN01000018
Bacillota
Macrococcus caseolyticus 5197_42554 [PIWN]
27024
26949
-
Met
CAT
[ENA]
¡û
>W1810152158
PIWO01000021
Bacillota
Macrococcus caseolyticus 5198_3_76 [PIWO]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810152178
PIWO01000022
Bacillota
Macrococcus caseolyticus 5198_3_76 [PIWO]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152275
PIWQ01000006
Bacillota
Macrococcus caseolyticus 5452_CC83 [PIWQ]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152287
PIWQ01000006
Bacillota
Macrococcus caseolyticus 5452_CC83 [PIWQ]
48918
48993
+
Met
CAT
[ENA]
¡û
>W1810152335
PIWR01000006
Bacillota
Macrococcus caseolyticus 5456_3_46 [PIWR]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152347
PIWR01000006
Bacillota
Macrococcus caseolyticus 5456_3_46 [PIWR]
48918
48993
+
Met
CAT
[ENA]
¡û
>W1810152379
PIWS01000012
Bacillota
Macrococcus caseolyticus 5457_3_80 [PIWS]
6148
6223
+
Met
CAT
[ENA]
¡û
>W1810152409
PIWS01000028
Bacillota
Macrococcus caseolyticus 5457_3_80 [PIWS]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152439
PIWT01000019
Bacillota
Macrococcus caseolyticus 5458_5_53 [PIWT]
12057
12132
+
Met
CAT
[ENA]
¡û
>W1810152473
PIWT01000034
Bacillota
Macrococcus caseolyticus 5458_5_53 [PIWT]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152512
PIWU01000010
Bacillota
Macrococcus caseolyticus 5459_5_49 [PIWU]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152524
PIWU01000010
Bacillota
Macrococcus caseolyticus 5459_5_49 [PIWU]
49200
49275
+
Met
CAT
[ENA]
¡û
>W1810152561
PIWV01000008
Bacillota
Macrococcus caseolyticus 5781_EF64 [PIWV]
71224
71149
-
Met
CAT
[ENA]
¡û
>W1810152573
PIWV01000008
Bacillota
Macrococcus caseolyticus 5781_EF64 [PIWV]
23316
23241
-
Met
CAT
[ENA]
¡û
>W1810152620
PIWW01000010
Bacillota
Macrococcus caseolyticus 5782_EF 83 [PIWW]
576
651
+
Met
CAT
[ENA]
¡û
>W1810152632
PIWW01000010
Bacillota
Macrococcus caseolyticus 5782_EF 83 [PIWW]
48480
48555
+
Met
CAT
[ENA]
¡û
>W1810152669
PIWX01000009
Bacillota
Macrococcus caseolyticus 5783_EF107 [PIWX]
70764
70689
-
Met
CAT
[ENA]
¡û
>W1810152681
PIWX01000009
Bacillota
Macrococcus caseolyticus 5783_EF107 [PIWX]
22862
22787
-
Met
CAT
[ENA]
¡û
>W1810152718
PIWY01000012
Bacillota
Macrococcus caseolyticus 5784_EF114 [PIWY]
34539
34614
+
Met
CAT
[ENA]
¡û
>W1810152749
PIWY01000031
Bacillota
Macrococcus caseolyticus 5784_EF114 [PIWY]
1307
1382
+
Met
CAT
[ENA]
¡û
>W1810152788
PIWZ01000006
Bacillota
Macrococcus caseolyticus 5785_EF123 [PIWZ]
116931
116856
-
Met
CAT
[ENA]
¡û
>W1810152800
PIWZ01000006
Bacillota
Macrococcus caseolyticus 5785_EF123 [PIWZ]
69313
69238
-
Met
CAT
[ENA]
¡û
>W1810152827
PIXA01000012
Bacillota
Macrococcus caseolyticus 5786_EF153 [PIXA]
6148
6223
+
Met
CAT
[ENA]
¡û
>W1810152857
PIXA01000027
Bacillota
Macrococcus caseolyticus 5786_EF153 [PIXA]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810152949
PIXC01000021
Bacillota
Macrococcus caseolyticus 5788_EF188 [PIXC]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810152969
PIXC01000022
Bacillota
Macrococcus caseolyticus 5788_EF188 [PIXC]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810153000
PIXD01000011
Bacillota
Macrococcus caseolyticus 5789_EF199 [PIXD]
34525
34600
+
Met
CAT
[ENA]
¡û
>W1810153032
PIXD01000039
Bacillota
Macrococcus caseolyticus 5789_EF199 [PIXD]
1307
1382
+
Met
CAT
[ENA]
¡û
>W1810153055
PIXE01000013
Bacillota
Macrococcus caseolyticus 5794_EF323 [PIXE]
41100
41025
-
Met
CAT
[ENA]
¡û
>W1810153091
PIXE01000029
Bacillota
Macrococcus caseolyticus 5794_EF323 [PIXE]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810153120
PIXF01000018
Bacillota
Macrococcus caseolyticus 5795_EF335 [PIXF]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810153140
PIXF01000019
Bacillota
Macrococcus caseolyticus 5795_EF335 [PIXF]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810153178
PIXG01000008
Bacillota
Macrococcus caseolyticus 5798_EF375 [PIXG]
71225
71150
-
Met
CAT
[ENA]
¡û
>W1810153190
PIXG01000008
Bacillota
Macrococcus caseolyticus 5798_EF375 [PIXG]
23316
23241
-
Met
CAT
[ENA]
¡û
>W1810153234
PIXH01000016
Bacillota
Macrococcus caseolyticus 5799_EF381 [PIXH]
12057
12132
+
Met
CAT
[ENA]
¡û
>W1810153254
PIXH01000018
Bacillota
Macrococcus caseolyticus 5799_EF381 [PIXH]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810153292
PIXI01000016
Bacillota
Macrococcus caseolyticus 5800_EF393a [PIXI]
28362
28287
-
Met
CAT
[ENA]
¡û
>W1810153312
PIXI01000018
Bacillota
Macrococcus caseolyticus 5800_EF393a [PIXI]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810153354
PIXJ01000014
Bacillota
Macrococcus caseolyticus 5804_BC29 [PIXJ]
1300
1375
+
Met
CAT
[ENA]
¡û
>W1810153366
PIXJ01000014
Bacillota
Macrococcus caseolyticus 5804_BC29 [PIXJ]
48927
49002
+
Met
CAT
[ENA]
¡û
>W1810153415
PIXK01000005
Bacillota
Macrococcus caseolyticus 5812_BC73 [PIXK]
1297
1372
+
Met
CAT
[ENA]
¡û
>W1810153427
PIXK01000005
Bacillota
Macrococcus caseolyticus 5812_BC73 [PIXK]
49142
49217
+
Met
CAT
[ENA]
¡û
>W1810153466
PIXL01000008
Bacillota
Macrococcus caseolyticus 5813_BC74 [PIXL]
70750
70675
-
Met
CAT
[ENA]
¡û
>W1810153478
PIXL01000008
Bacillota
Macrococcus caseolyticus 5813_BC74 [PIXL]
22847
22772
-
Met
CAT
[ENA]
¡û
>W1810153529
PIXM01000005
Bacillota
Macrococcus caseolyticus 5814_BC75 [PIXM]
1297
1372
+
Met
CAT
[ENA]
¡û
>W1810153541
PIXM01000005
Bacillota
Macrococcus caseolyticus 5814_BC75 [PIXM]
49142
49217
+
Met
CAT
[ENA]
¡û
>W1810153637
PIXO01000009
Bacillota
Macrococcus caseolyticus 5816_BC109 [PIXO]
70764
70689
-
Met
CAT
[ENA]
¡û
>W1810153649
PIXO01000009
Bacillota
Macrococcus caseolyticus 5816_BC109 [PIXO]
22862
22787
-
Met
CAT
[ENA]
¡û
>W1810153688
PIXP01000017
Bacillota
Macrococcus caseolyticus 5818_BC116 [PIXP]
12056
12131
+
Met
CAT
[ENA]
¡û
>W1810153708
PIXP01000019
Bacillota
Macrococcus caseolyticus 5818_BC116 [PIXP]
1296
1371
+
Met
CAT
[ENA]
¡û
>W1810443783
PZJF01000008
Bacillota
Macrococcus caseolyticus subsp. caseolyticus CCM 3540 [PZJF]
31168
31093
-
Met
CAT
[ENA]
¡û
>W1810443816
PZJG01000001
Bacillota
Macrococcus bohemicus 03/115 [PZJG]
1092
1167
+
Met
CAT
[ENA]
¡û
>W1810443828
PZJG01000001
Bacillota
Macrococcus bohemicus 03/115 [PZJG]
52096
52169
+
Met
CAT
[ENA]
¡û
>W1810443882
PZJH01000004
Bacillota
Macrococcus epidermidis 01/688 [PZJH]
1323
1398
+
Met
CAT
[ENA]
¡û
>W1810443894
PZJH01000004
Bacillota
Macrococcus epidermidis 01/688 [PZJH]
60676
60751
+
Met
CAT
[ENA]
¡û
>W1810603451
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
185928
186003
+
Met
CAT
[ENA]
¡û
>W1810603459
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
227531
227606
+
Met
CAT
[ENA]
¡û
>C151053156
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
485625
485700
+
Met
CAT
[Ensembl]
¡û
>C151053163
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
486747
486822
+
Met
CAT
[Ensembl]
¡û
>C151081564
CP011366
Bacillota
Salinicoccus halodurans H3B36 [CP011366]
1839396
1839321
-
Met
CAT
[Ensembl]
¡û
>W1511347231
JRJB01000026
Bacillota
Lactobacillus sp. wkB10 [JRJB]
1088
1013
-
Met
CAT
[ENA]
¡û
>W1511347238
JRJB01000026
Bacillota
Lactobacillus sp. wkB10 [JRJB]
82
7
-
Met
CAT
[ENA]
¡û
>W1511501563
JXBY01000013
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
934
1009
+
Met
CAT
[ENA]
¡û
>W1511501570
JXBY01000013
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
1970
2045
+
Met
CAT
[ENA]
¡û
>W1511505327
JXJR01000005
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
926
1001
+
Met
CAT
[ENA]
¡û
>W1511505334
JXJR01000005
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
2047
2122
+
Met
CAT
[ENA]
¡û
>W1511505416
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
927
1002
+
Met
CAT
[ENA]
¡û
>W1511505423
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
2251
2326
+
Met
CAT
[ENA]
¡û
>W1511505513
JXLI01000009
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
935
1010
+
Met
CAT
[ENA]
¡û
>W1511505520
JXLI01000009
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
1927
2002
+
Met
CAT
[ENA]
¡û
>W1710552977
FOHF01000002
Bacillota
Pseudobutyrivibrio sp. C4 [FOHF]
185129
185203
+
Met
CAT
[ENA]
¡û
>W1710567872
FOTB01000006
Bacillota
Salinicoccus halodurans [FOTB]
230884
230809
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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