This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184515 (88 seq.)
>W1710809801
LKEV01000002
Actinomycetota
Corynebacterium lowii [LKEV]
377164
377240
+
Met
CAT
[ENA]
¡û
>W1711066601
LSCZ01000016
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
23432
23506
+
Met
CAT
[ENA]
¡û
>W1711080525
LSRB01000019
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
24083
24157
+
Met
CAT
[ENA]
¡û
>W1711093742
LTFH01000002
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
103641
103715
+
Met
CAT
[ENA]
¡û
>W1711094345
LTFV01000062
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
117872
117798
-
Met
CAT
[ENA]
¡û
>W1711094432
LTFX01000053
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
11440
11516
+
Met
CAT
[ENA]
¡û
>W1711094943
LTGK01000026
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
18068
17994
-
Met
CAT
[ENA]
¡û
>W1711095319
LTGR01000061
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
56940
56864
-
Met
CAT
[ENA]
¡û
>W1711095983
LTHJ01000013
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
70335
70259
-
Met
CAT
[ENA]
¡û
>W1711096433
LTHS01000075
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
23430
23504
+
Met
CAT
[ENA]
¡û
>W1711097252
LTIM01000065
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
52513
52439
-
Met
CAT
[ENA]
¡û
>W1711098697
LTJU01000103
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
15056
15132
+
Met
CAT
[ENA]
¡û
>W1711099017
LTKC01000093
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
23948
24024
+
Met
CAT
[ENA]
¡û
>W1711099713
LTKS01000033
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
50368
50292
-
Met
CAT
[ENA]
¡û
>W1711099764
LTKT01000028
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
1021
1095
+
Met
CAT
[ENA]
¡û
>W1711106057
LTRL01000013
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
9320
9246
-
Met
CAT
[ENA]
¡û
>W1711106905
LTSH01000075
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
6942
7018
+
Met
CAT
[ENA]
¡û
>W1711108147
LTTL01000020
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
52887
52811
-
Met
CAT
[ENA]
¡û
>W1711108510
LTTU01000079
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
54128
54054
-
Met
CAT
[ENA]
¡û
>W1711108565
LTTW01000030
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
11702
11778
+
Met
CAT
[ENA]
¡û
>W1711109280
LTUN01000029
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
57392
57318
-
Met
CAT
[ENA]
¡û
>W1711109380
LTUP01000059
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
23426
23500
+
Met
CAT
[ENA]
¡û
>W1711109796
LTUY01000055
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
13382
13308
-
Met
CAT
[ENA]
¡û
>W1711110614
LTVS01000014
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
57563
57487
-
Met
CAT
[ENA]
¡û
>W1711111639
LTWQ01000060
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
21255
21329
+
Met
CAT
[ENA]
¡û
>W1711112888
LTXU01000113
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
62603
62677
+
Met
CAT
[ENA]
¡û
>W1711186600
LWOI01000105
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
52089
52013
-
Met
CAT
[ENA]
¡û
>W1711186700
LWOK01000042
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
57340
57264
-
Met
CAT
[ENA]
¡û
>W1711188298
LWQH01000098
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
57244
57168
-
Met
CAT
[ENA]
¡û
>W131160842
AQXB01000001
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
337265
337341
+
Met
CAT
[ENA]
¡û
>C171001897
CP009245
Actinomycetota
Corynebacterium aquilae DSM 44791 S-613 [CP009245]
2069267
2069193
-
Met
CAT
-
¡û
>WENV180831780
ODKC01000084
[ODKC] human metagenome; G_DNA_Supragingival plaque
61513
61439
-
Ile2
CAT
[ENA]
¢þ
>WENV181032384
ODXM01011213
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
76
2
-
Ile2
CAT
[ENA]
¢þ
>WENV181212241
OFBN01000694
[OFBN] metagenome; hydrothermal vent
1818
1744
-
Ile2
CAT
[ENA]
¢þ
>WENV181212313
OFBO01000280
[OFBO] metagenome; hydrothermal vent
3871
3797
-
Ile2
CAT
[ENA]
¢þ
>WENV181212448
OFBQ01000129
[OFBQ] metagenome; hydrothermal vent
3578
3504
-
Ile2
CAT
[ENA]
¢þ
>WENV181212631
OFBS01000588
[OFBS] metagenome; hydrothermal vent
1976
1902
-
Ile2
CAT
[ENA]
¢þ
>WENV181212708
OFBT01000500
[OFBT] metagenome; hydrothermal vent
1555
1629
+
Ile2
CAT
[ENA]
¢þ
>WENV181326295
OFLL01000074
[OFLL] metagenome; faeces
43378
43304
-
Ile2
CAT
[ENA]
¢þ
>WENV182629196
OJKR01028271
[OJKR] metagenome; surface
287
361
+
Ile2
CAT
[ENA]
¢þ
>WENV182636481
OJKZ01009150
[OJKZ] metagenome; surface
75
1
-
Ile2
CAT
[ENA]
¢þ
>WENV182640786
OJLD01002243
[OJLD] metagenome; surface
138
212
+
Ile2
CAT
[ENA]
¢þ
>WENV182641159
OJLE01013632
[OJLE] metagenome; surface
477
551
+
Ile2
CAT
[ENA]
¢þ
>WENV182641865
OJLK01005233
[OJLK] metagenome; surface
557
483
-
Ile2
CAT
[ENA]
¢þ
>WENV182641967
OJLL01000093
[OJLL] metagenome; surface
6631
6555
-
Ile2
CAT
[ENA]
¢þ
>WENV182641973
OJLL01000107
[OJLL] metagenome; surface
25754
25828
+
Ile2
CAT
[ENA]
¢þ
>WENV182642772
OJLP01000453
[OJLP] metagenome; surface
1888
1814
-
Ile2
CAT
[ENA]
¢þ
>WENV182643399
OJLU01006057
[OJLU] metagenome; surface
590
516
-
Ile2
CAT
[ENA]
¢þ
>WENV182643846
OJLW01001714
[OJLW] metagenome; surface
2145
2219
+
Ile2
CAT
[ENA]
¢þ
>WENV182643899
OJLW01002506
[OJLW] metagenome; surface
822
896
+
Ile2
CAT
[ENA]
¢þ
>WENV182644038
OJLW01005945
[OJLW] metagenome; surface
2088
2014
-
Ile2
CAT
[ENA]
¢þ
>WENV182645051
OJLY01001844
[OJLY] metagenome; surface
4070
3996
-
Ile2
CAT
[ENA]
¢þ
>WENV182645085
OJLY01002360
[OJLY] metagenome; surface
822
896
+
Ile2
CAT
[ENA]
¢þ
>WENV182645961
OJLZ01014650
[OJLZ] metagenome; surface
701
775
+
Ile2
CAT
[ENA]
¢þ
>WENV182646402
OJMA01015880
[OJMA] metagenome; surface
5
79
+
Ile2
CAT
[ENA]
¢þ
>WENV182646551
OJMB01064778
[OJMB] metagenome; surface
711
637
-
Ile2
CAT
[ENA]
¢þ
>WENV182671868
OJNM01006295
[OJNM] metagenome; surface
917
991
+
Ile2
CAT
[ENA]
¢þ
>WENV183063499
OLIG01000482
[OLIG] metagenome; surface
331
405
+
Ile2
CAT
[ENA]
¢þ
>WENV183090783
OLKE01005304
[OLKE] metagenome; surface
442
516
+
Ile2
CAT
[ENA]
¢þ
>C181214803
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
785263
785337
+
Met
CAT
-
¡û
>C191207685
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
2146151
2146077
-
Met
CAT
-
¡û
>W09127862
ACLH01000089
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
58624
58550
-
Met
CAT
[ENA]
¡û
>W09135428
ACVP01000020
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
41970
41896
-
Met
CAT
[ENA]
¡û
>W1910438309
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
534416
534490
+
Met
CAT
[ENA]
¡û
>W1910598668
LBCN01000020
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
12463
12537
+
Met
CAT
[ENA]
¡û
>W1910640593
LTBE01000025
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
15771
15845
+
Met
CAT
[ENA]
¡û
>W1910640626
LTBF01000006
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
40686
40760
+
Met
CAT
[ENA]
¡û
>W1910640727
LTBH01000010
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
51318
51244
-
Met
CAT
[ENA]
¡û
>C09102758
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
1946894
1946820
-
Met
CAT
[Ensembl]
¡û
>W1911204349
NRIL01000012
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
59155
59229
+
Met
CAT
[ENA]
¡û
>W1911204411
NRIM01000014
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
29448
29522
+
Met
CAT
[ENA]
¡û
>W1911204456
NRIM01000047
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
7124
7050
-
Met
CAT
[ENA]
¡û
>W1911204482
NRIN01000013
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
19485
19559
+
Met
CAT
[ENA]
¡û
>W1911204540
NRIO01000012
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
10731
10805
+
Met
CAT
[ENA]
¡û
>W1911204645
NRIP01000036
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
20012
20086
+
Met
CAT
[ENA]
¡û
>W1911596632
PNHI01000002
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
201555
201481
-
Met
CAT
[ENA]
¡û
>W1810155027
PJAF01000003
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
81915
81991
+
Met
CAT
[ENA]
¡û
>W1810187537
PKHR01000001
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
252580
252654
+
Met
CAT
[ENA]
¡û
>C151073137
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
2029484
2029408
-
Met
CAT
[Ensembl]
¡û
>C151084408
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
2520076
2520002
-
Met
CAT
[Ensembl]
¡û
>W1511365554
JSEF01000015
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
367836
367762
-
Met
CAT
[ENA]
¡û
>W1511438566
JUMN01000089
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
14567
14643
+
Met
CAT
[ENA]
¡û
>W1511585500
LAYQ01000001
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
212754
212830
+
Met
CAT
[ENA]
¡û
>W1610068156
BCRC01000006
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
5253
5327
+
Met
CAT
[ENA]
¡û
>W1610673856
LKEV01000002
Actinomycetota
Corynebacterium lowii [LKEV]
377164
377240
+
Met
CAT
[ENA]
¡û
>W1610907171
LSCZ01000016
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
23432
23506
+
Met
CAT
[ENA]
¡û
>W1610919392
LSRB01000019
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
24083
24157
+
Met
CAT
[ENA]
¡û
>W1710065529
BCRC01000006
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
5253
5327
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK