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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184516 (60 seq.)
>W131219604
ATYS01000003
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
158914
158838
-
Arg
ACG
[ENA]
¡û
>W131157132
AQQO01000358
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
27660
27584
-
Arg
ACG
[ENA]
¡û
>W131157134
AQQO01000358
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
27431
27355
-
Arg
ACG
[ENA]
¡û
>W131157136
AQQO01000358
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
27127
27051
-
Arg
ACG
[ENA]
¡û
>W131157138
AQQO01000358
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
26815
26739
-
Arg
ACG
[ENA]
¡û
>WENV180474528
OBYS01001704
[OBYS] human gut metagenome; faeces
3569
3493
-
Arg
ACG
[ENA]
¢þ
>WENV182958470
OKWH01013296
[OKWH] human gut metagenome; human gut
989
913
-
Arg
ACG
[ENA]
¢þ
>WENV183745646
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
27118
27042
-
Arg
ACG
[ENA]
¢þ
>WENV183745647
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
26969
26893
-
Arg
ACG
[ENA]
¢þ
>WENV183745648
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
26820
26744
-
Arg
ACG
[ENA]
¢þ
>C181160556
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3280426
3280502
+
Arg
ACG
-
¡û
>C181160558
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3280655
3280731
+
Arg
ACG
-
¡û
>C181160560
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3280959
3281035
+
Arg
ACG
-
¡û
>C181160562
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3281270
3281346
+
Arg
ACG
-
¡û
>W1910584850
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4907
4831
-
Arg
ACG
[ENA]
¡û
>W1910584851
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4772
4696
-
Arg
ACG
[ENA]
¡û
>W1910584852
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4641
4565
-
Arg
ACG
[ENA]
¡û
>W1911573065
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594142
2594218
+
Arg
ACG
[ENA]
¡û
>W1911573066
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594291
2594367
+
Arg
ACG
[ENA]
¡û
>W1911573067
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594440
2594516
+
Arg
ACG
[ENA]
¡û
>W1511222419
JNGH01000108
Gammaproteobacteria
Trabulsiella odontotermitis 1 [JNGH]
46115
46039
-
Arg
ACG
[ENA]
¡û
>W1511222420
JNGH01000108
Gammaproteobacteria
Trabulsiella odontotermitis 1 [JNGH]
46007
45931
-
Arg
ACG
[ENA]
¡û
>W1511222460
JNGI01000137
Gammaproteobacteria
Trabulsiella odontotermitis 12 [JNGI]
81
5
-
Arg
ACG
[ENA]
¡û
>W1511222461
JNGI01000146
Gammaproteobacteria
Trabulsiella odontotermitis 12 [JNGI]
16
92
+
Arg
ACG
[ENA]
¡û
>W1511222462
JNGI01000146
Gammaproteobacteria
Trabulsiella odontotermitis 12 [JNGI]
124
200
+
Arg
ACG
[ENA]
¡û
>W1511222466
JNGI01000182
Gammaproteobacteria
Trabulsiella odontotermitis 12 [JNGI]
15455
15379
-
Arg
ACG
[ENA]
¡û
>W1511347995
JRKB01000121
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
76
1
-
Arg
ACG
[ENA]
¡û
>W1511348006
JRKB01000145
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
75
1
-
Arg
ACG
[ENA]
¡û
>W1511478841
JWHQ01000007
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
11956
11880
-
Arg
ACG
[ENA]
¡û
>W1511478843
JWHQ01000007
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
11727
11651
-
Arg
ACG
[ENA]
¡û
>W1511478845
JWHQ01000007
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
11424
11348
-
Arg
ACG
[ENA]
¡û
>W1511478847
JWHQ01000007
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
11112
11036
-
Arg
ACG
[ENA]
¡û
>C161109391
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2551374
2551298
-
Arg
ACG
[Ensembl]
¡û
>C161109393
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2551145
2551069
-
Arg
ACG
[Ensembl]
¡û
>C161109395
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2550841
2550765
-
Arg
ACG
[Ensembl]
¡û
>C161109397
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2550529
2550453
-
Arg
ACG
[Ensembl]
¡û
>W121126289
BAGV01000093
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
22142
22066
-
Arg
ACG
[ENA]
¡û
>W121126290
BAGV01000093
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
21970
21894
-
Arg
ACG
[ENA]
¡û
>W121126291
BAGV01000093
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
21797
21721
-
Arg
ACG
[ENA]
¡û
>W1610504014
FLOE01000018
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
80317
80393
+
Arg
ACG
[ENA]
¡û
>W1610504015
FLOE01000018
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
80475
80551
+
Arg
ACG
[ENA]
¡û
>W1610504016
FLOE01000018
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
80633
80709
+
Arg
ACG
[ENA]
¡û
>W1610628003
LIFU01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFU]
262960
263036
+
Arg
ACG
[ENA]
¡û
>W1610628004
LIFU01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFU]
263068
263144
+
Arg
ACG
[ENA]
¡û
>W1610628086
LIFV01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFV]
262963
263039
+
Arg
ACG
[ENA]
¡û
>W1610628087
LIFV01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFV]
263071
263147
+
Arg
ACG
[ENA]
¡û
>W1610628212
LIFX01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFX]
262951
263027
+
Arg
ACG
[ENA]
¡û
>W1610628213
LIFX01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFX]
263059
263135
+
Arg
ACG
[ENA]
¡û
>W1610628283
LIFY01000001
Gammaproteobacteria
Trabulsiella odontotermitis [LIFY]
262960
263036
+
Arg
ACG
[ENA]
¡û
>W1610628284
LIFY01000001
Gammaproteobacteria
Trabulsiella odontotermitis [LIFY]
263068
263144
+
Arg
ACG
[ENA]
¡û
>W1710583980
FQVF01000015
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
5106
5030
-
Arg
ACG
[ENA]
¡û
>W1710583981
FQVF01000015
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
4970
4894
-
Arg
ACG
[ENA]
¡û
>W1710759130
LIFU01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFU]
262960
263036
+
Arg
ACG
[ENA]
¡û
>W1710759131
LIFU01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFU]
263068
263144
+
Arg
ACG
[ENA]
¡û
>W1710759213
LIFV01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFV]
262963
263039
+
Arg
ACG
[ENA]
¡û
>W1710759214
LIFV01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFV]
263071
263147
+
Arg
ACG
[ENA]
¡û
>W1710759339
LIFX01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFX]
262951
263027
+
Arg
ACG
[ENA]
¡û
>W1710759340
LIFX01000003
Gammaproteobacteria
Trabulsiella odontotermitis [LIFX]
263059
263135
+
Arg
ACG
[ENA]
¡û
>W1710759410
LIFY01000001
Gammaproteobacteria
Trabulsiella odontotermitis [LIFY]
262960
263036
+
Arg
ACG
[ENA]
¡û
>W1710759411
LIFY01000001
Gammaproteobacteria
Trabulsiella odontotermitis [LIFY]
263068
263144
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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