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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184548 (31 seq.)
>C171119380
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
1819129
1819053
-
Pro
TGG
-
¡û
>W131104547
APCR01000425
Betaproteobacteria
Comamonas sp. B-9 [APCR]
13871
13795
-
Pro
TGG
[ENA]
¡û
>C026313
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
2015085
2015009
-
Pro
TGG
[Ensembl]
¡û
>WENV180593895
OCOY01002311
[OCOY] marine metagenome; ENVO:00002010
1937
2013
+
Pro
TGG
[ENA]
¢þ
>WENV180731693
ODGW01007005
[ODGW] human metagenome; G_DNA_Supragingival plaque
1519
1595
+
Pro
TGG
[ENA]
¢þ
>WENV180836080
ODKE01036464
[ODKE] human metagenome; G_DNA_Supragingival plaque
87
11
-
Pro
TGG
[ENA]
¢þ
>WENV180938882
ODTX01008976
[ODTX] human metagenome; G_DNA_Supragingival plaque
794
718
-
Pro
TGG
[ENA]
¢þ
>WENV180981927
ODVE01087218
[ODVE] human metagenome; G_DNA_Supragingival plaque
446
522
+
Pro
TGG
[ENA]
¢þ
>WENV181049665
ODYD01001205
[ODYD] human metagenome; G_DNA_Supragingival plaque
9855
9779
-
Pro
TGG
[ENA]
¢þ
>WENV181070483
OEAE01002170
[OEAE] human metagenome; G_DNA_Supragingival plaque
4808
4732
-
Pro
TGG
[ENA]
¢þ
>WENV181180147
OEJT01091680
[OEJT] human metagenome; G_DNA_Supragingival plaque
110
34
-
Pro
TGG
[ENA]
¢þ
>WENV181322657
OFKT01010660
[OFKT] marine metagenome; sea ice
357
433
+
Pro
TGG
[ENA]
¢þ
>W141237787
BBJR01000049
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
42647
42571
-
Pro
TGG
[ENA]
¡û
>W141237788
BBJR01000049
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
34757
34681
-
Pro
TGG
[ENA]
¡û
>W141319068
JBOK01000024
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
20941
21017
+
Pro
TGG
[ENA]
¡û
>W141319069
JBOK01000024
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
32371
32447
+
Pro
TGG
[ENA]
¡û
>WENV170010336
APMI01014219
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2092
2168
+
Pro
TGG
[ENA]
¢þ
>C181064551
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2759213
2759137
-
Pro
TGG
-
¡û
>C181158430
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
3553956
3554032
+
Pro
TGG
-
¡û
>W09106025
AASQ01000001
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
187536
187460
-
Pro
TGG
[ENA]
¡û
>W1911502792
OEQA01000007
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
424828
424904
+
Pro
TGG
[ENA]
¡û
>C151011121
CP006704
Betaproteobacteria
Comamonas testosteroni TK102 [CP006704]
1965581
1965505
-
Pro
TGG
[Ensembl]
¡û
>C151090633
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
157749
157673
-
Pro
TGG
-
¡û
>W1510016574
BBSJ01000051
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
1304462
1304386
-
Gln
TTG
[ENA]
¡û
>W1511204484
JMRS01000025
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
20198
20274
+
Pro
TGG
[ENA]
¡û
>W1511516976
JXWN01000086
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
45083
45159
+
Pro
TGG
[ENA]
¡û
>W1511516977
JXWN01000086
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
56468
56544
+
Pro
TGG
[ENA]
¡û
>C161002828
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1923287
1923363
+
Pro
TGG
-
¡û
>C161002829
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
1934672
1934748
+
Pro
TGG
-
¡û
>W1610591955
LDSL01000108
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
17824
17748
-
Pro
TGG
[ENA]
¡û
>W1710711235
LDSL01000108
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
17824
17748
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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