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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184563 (12 seq.)
>WENV181243017
OFFG01010512
[OFFG] mouse gut metagenome; faeces
104
180
+
Arg
ACG
[ENA]
¡û
>WENV181246853
OFFK01001459
[OFFK] mouse gut metagenome; faeces
5131
5207
+
Arg
ACG
[ENA]
¡û
>WENV181256486
OFFT01005795
[OFFT] mouse gut metagenome; faeces
2293
2369
+
Arg
ACG
[ENA]
¡û
>WENV181265794
OFGB01001527
[OFGB] mouse gut metagenome; faeces
11519
11443
-
Arg
ACG
[ENA]
¡û
>WENV181270824
OFGF01001566
[OFGF] mouse gut metagenome; faeces
2356
2432
+
Arg
ACG
[ENA]
¡û
>WENV181272317
OFGG01007053
[OFGG] mouse gut metagenome; faeces
2318
2394
+
Arg
ACG
[ENA]
¡û
>WENV181276508
OFGK01007030
[OFGK] mouse gut metagenome; faeces
1827
1903
+
Arg
ACG
[ENA]
¡û
>WENV181278599
OFGM01004908
[OFGM] mouse gut metagenome; faeces
2231
2155
-
Arg
ACG
[ENA]
¡û
>WENV181284880
OFGR01011129
[OFGR] mouse gut metagenome; faeces
1177
1101
-
Arg
ACG
[ENA]
¡û
>WENV181290060
OFHA01007054
[OFHA] mouse gut metagenome; faeces
2296
2372
+
Arg
ACG
[ENA]
¡û
>WENV181291164
OFHB01004496
[OFHB] mouse gut metagenome; faeces
3140
3216
+
Arg
ACG
[ENA]
¡û
>WENV181299512
OFHM01011149
[OFHM] mouse gut metagenome; faeces
1411
1487
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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