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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184600 (48 seq.)
>W1710892596
LNDX01000001
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
14359
14275
-
Leu
TAG
[ENA]
¡û
>W1711138986
LVEO01000018
Bacteroidota
Flavobacterium glycines [LVEO]
683378
683460
+
Leu
TAG
[ENA]
¡û
>W1711744089
MUFX01000006
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
48152
48236
+
Leu
TAG
[ENA]
¡û
>C171053183
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
1467233
1467317
+
Leu
TAG
-
¡û
>C171067624
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
2098336
2098420
+
Leu
TAG
-
¡û
>W131225227
AUDK01000001
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
258856
258774
-
Leu
TAG
[ENA]
¡û
>W131225271
AUDL01000004
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
61572
61656
+
Leu
TAG
[ENA]
¡û
>C009435
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
1555382
1555298
-
Leu
TAG
[Ensembl]
¡û
>WENV180039185
LLBY010034847
[LLBY] soil metagenome; soil from tomato rhizosphere
11791
11709
-
Leu
TAG
[ENA]
¢þ
>W141291947
JATV01000014
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
5399
5483
+
Leu
TAG
[ENA]
¡û
>WENV183726718
PJTO01000099
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
106725
106807
+
Leu
TAG
[ENA]
¢þ
>WENV183729980
PJTR01000282
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48270
48352
+
Leu
TAG
[ENA]
¢þ
>WENV183730094
PJTR01000591
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
19142
19224
+
Leu
TAG
[ENA]
¢þ
>WENV183730109
PJTR01000764
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
34
116
+
Leu
TAG
[ENA]
¢þ
>WENV183730114
PJTR01000829
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
34
116
+
Leu
TAG
[ENA]
¢þ
>WENV183730687
PJTS01000335
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
10853
10771
-
Leu
TAG
[ENA]
¢þ
>WENV183731698
PJTT01000108
[PJTT] soil metagenome; Soil (2) enriched on wood chips
10853
10771
-
Leu
TAG
[ENA]
¢þ
>WENV183734745
PJUA01000002
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
238423
238341
-
Leu
TAG
[ENA]
¢þ
>WENV183735842
PJUB01004803
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
796
714
-
Leu
TAG
[ENA]
¢þ
>WENV183736027
PJUC01000002
[PJUC] soil metagenome; Soil enriched on filter paper
238423
238341
-
Leu
TAG
[ENA]
¢þ
>WENV170709011
LNFM01000068
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3030
2946
-
Leu
TAG
[ENA]
¢þ
>C181176653
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
1504969
1504887
-
Leu
TAG
-
¡û
>C191025477
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
346269
346187
-
Leu
TAG
-
¡û
>W09105451
AAPM01000002
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
302712
302796
+
Leu
TAG
[ENA]
¡û
>W141726699
JNCA01000026
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
47929
48013
+
Leu
TAG
[ENA]
¡û
>W1910183318
BJNP01000060
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
11660
11578
-
Leu
TAG
[ENA]
¡û
>W1910577899
JUIV01000002
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
401646
401564
-
Leu
TAG
[ENA]
¡û
>W1910792780
MRCM01000008
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
242159
242077
-
Leu
TAG
[ENA]
¡û
>W1910809278
MUGZ01000017
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
63275
63193
-
Leu
TAG
[ENA]
¡û
>W1810657126
QJGZ01000041
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
217488
217406
-
Leu
TAG
[ENA]
¡û
>W1810669721
QJRH01000071
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
81901
81819
-
Leu
TAG
[ENA]
¡û
>W1810669730
QJRI01000151
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
1590
1672
+
Leu
TAG
[ENA]
¡û
>W1810669813
QJRJ01000079
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
363368
363450
+
Leu
TAG
[ENA]
¡û
>W121103528
AKZQ01000027
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
16504
16420
-
Leu
TAG
[ENA]
¡û
>W1610521465
JMTM01000046
Bacteroidota
Flavobacterium succinicans [JMTM]
286683
286765
+
Leu
TAG
[ENA]
¡û
>W1610534946
JRLG01000022
Bacteroidota
Flavobacterium daejeonense [JRLG]
13418
13500
+
Leu
TAG
[ENA]
¡û
>W1610752862
LNDX01000001
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
14359
14275
-
Leu
TAG
[ENA]
¡û
>W1610949994
LVEO01000018
Bacteroidota
Flavobacterium glycines [LVEO]
683378
683460
+
Leu
TAG
[ENA]
¡û
>W1710507219
FMVC01000001
Bacteroidota
Flavobacterium anhuiense [FMVC]
358348
358432
+
Leu
TAG
[ENA]
¡û
>W1710519205
FNEO01000001
Bacteroidota
Flavobacterium glycines [FNEO]
212004
211922
-
Leu
TAG
[ENA]
¡û
>W1710559007
FOMH01000006
Bacteroidota
Flavobacterium phragmitis [FOMH]
360200
360282
+
Leu
TAG
[ENA]
¡û
>W1710569855
FOUT01000005
Bacteroidota
Flavobacterium succinicans [FOUT]
230042
229958
-
Leu
TAG
[ENA]
¡û
>W1710585087
FQWC01000001
Bacteroidota
Flavobacterium defluvii [FQWC]
642156
642240
+
Leu
TAG
[ENA]
¡û
>W1710585317
FQWH01000001
Bacteroidota
Flavobacterium johnsoniae [FQWH]
645904
645988
+
Leu
TAG
[ENA]
¡û
>W1710589907
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
881086
881002
-
Leu
TAG
[ENA]
¡û
>W1710591949
FRCC01000004
Bacteroidota
Flavobacterium flevense [FRCC]
154598
154682
+
Leu
TAG
[ENA]
¡û
>W1710620413
JMTM01000046
Bacteroidota
Flavobacterium succinicans [JMTM]
286683
286765
+
Leu
TAG
[ENA]
¡û
>W1710637182
JRLG01000022
Bacteroidota
Flavobacterium daejeonense [JRLG]
13418
13500
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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