This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184695 (16 seq.)
>W1711317670
MAXN01000117
Thermodesulfobacteriota
Desulfuromonadales bacterium C00003094 [MAXN]
4081
4005
-
Pro
CGG
[ENA]
¡û
>W1711317833
MAXT01000358
Thermodesulfobacteriota
Desulfuromonadales bacterium C00003107 [MAXT]
2396
2320
-
Pro
CGG
[ENA]
¡û
>C171038995
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
2656002
2656078
+
Pro
CGG
-
¡û
>C171039156
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
1717058
1717134
+
Pro
CGG
-
¡û
>C010248
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
4943673
4943597
-
Pro
CGG
[Ensembl]
¡û
>C015953
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
786904
786828
-
Pro
CGG
[Ensembl]
¡û
>w018103
AASH01000032
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
24439
24361
-
Pro
CGG
[ENA]
¡û
>WENV170657532
JTFP01000299
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
5377
5301
-
Pro
CGG
[ENA]
¢þ
>WENV170694149
LGVD01015134
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
6008
5932
-
Pro
CGG
[ENA]
¢þ
>WENV170695789
LGVE01171198
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
903
979
+
Pro
CGG
[ENA]
¢þ
>WENV170697232
LGVF01097755
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
6160
6084
-
Pro
CGG
[ENA]
¢þ
>WENV170699288
LGVF01521096
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
3817
3741
-
Pro
CGG
[ENA]
¢þ
>W09105075
AAON01000028
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
30172
30096
-
Pro
CGG
[ENA]
¡û
>C09106338
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
498331
498407
+
Pro
CGG
[Ensembl]
¡û
>W1610046435
BBCJ01000013
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
108463
108539
+
Pro
CGG
[ENA]
¡û
>W1710043231
BBCJ01000013
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
108463
108539
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK