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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184753 (32 seq.)
>C171046485
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
2890818
2890892
+
Met
CAT
-
¡û
>WENV180016005
FSTV01000499
[FSTV] metagenome; soil
3573
3499
-
Ile2
CAT
[ENA]
¡û
>WENV180017240
FSWQ01003931
[FSWQ] metagenome; soil
2794
2868
+
Ile2
CAT
[ENA]
¡û
>WENV180019786
FTCO01000470
[FTCO] metagenome; soil
699
773
+
Ile2
CAT
[ENA]
¡û
>WENV180020185
FTCX01000268
[FTCX] metagenome; soil
1379
1305
-
Ile2
CAT
[ENA]
¡û
>WENV180020684
FTDA01000647
[FTDA] metagenome; soil
3254
3327
+
Ile2
CAT
[ENA]
¡û
>WENV180027781
FTIZ01083167
[FTIZ] metagenome; soil
2
76
+
Ile2
CAT
[ENA]
¡û
>WENV180028023
FTIZ01517483
[FTIZ] metagenome; soil
1
75
+
Ile2
CAT
[ENA]
¡û
>WENV180034052
FTKM01295933
[FTKM] metagenome; soil
1
75
+
Ile2
CAT
[ENA]
¡û
>WENV181286612
OFGW01010655
[OFGW] soil metagenome; Clay
361
287
-
Ile2
CAT
[ENA]
¡û
>WENV181294615
OFHH01016508
[OFHH] soil metagenome; Clay
883
807
-
Ile2
CAT
[ENA]
¡û
>C08008948
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
5270640
5270564
-
Met
CAT
[Ensembl]
¡û
>WENV183093229
OLLW01000096
[OLLW] soil metagenome; soil
7865
7791
-
Ile2
CAT
[ENA]
¡û
>WENV170634713
JAHE01035921
[JAHE] sediment metagenome; lake sediment
285
359
+
Met
CAT
[ENA]
¡û
>C181012517
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
6207787
6207713
-
Met
CAT
-
¡û
>C191010097
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
6475516
6475442
-
Met
CAT
-
¡û
>W2010370086
CAHJWM010000004
Myxococcota
Myxococcales bacterium [CAHJWM]
51450
51524
+
Ile2
CAT
[ENA]
¡û
>C231448200
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
6475710
6475636
-
Ile2
CAT
-
¡û
>C131010785
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
6410908
6410832
-
Met
CAT
[Ensembl]
¡û
>W1610520400
JELX01003176
Myxococcota
Sorangium cellulosum [JELX]
1923
1847
-
Met
CAT
[ENA]
¡û
>W1610520437
JELY01001963
Myxococcota
Sorangium cellulosum [JELY]
93
169
+
Met
CAT
[ENA]
¡û
>W1610520498
JELZ01002158
Myxococcota
Sorangium cellulosum [JELZ]
1929
1853
-
Met
CAT
[ENA]
¡û
>W1610520550
JEMA01001071
Myxococcota
Sorangium cellulosum [JEMA]
6386
6310
-
Met
CAT
[ENA]
¡û
>W1610520602
JEMB01002941
Myxococcota
Sorangium cellulosum [JEMB]
5327
5251
-
Met
CAT
[ENA]
¡û
>W1610520644
JEMC01002909
Myxococcota
Sorangium cellulosum [JEMC]
914
990
+
Met
CAT
[ENA]
¡û
>W1610520668
JEMD01001193
Myxococcota
Sorangium cellulosum [JEMD]
1994
1918
-
Met
CAT
[ENA]
¡û
>W1610520749
JEME01002439
Myxococcota
Sorangium cellulosum [JEME]
6754
6678
-
Met
CAT
[ENA]
¡û
>W1710615915
JELY01001963
Myxococcota
Sorangium cellulosum [JELY]
93
169
+
Met
CAT
[ENA]
¡û
>W1710616028
JEMA01001071
Myxococcota
Sorangium cellulosum [JEMA]
6386
6310
-
Met
CAT
[ENA]
¡û
>W1710616122
JEMC01002909
Myxococcota
Sorangium cellulosum [JEMC]
914
990
+
Met
CAT
[ENA]
¡û
>W1710616146
JEMD01001193
Myxococcota
Sorangium cellulosum [JEMD]
1994
1918
-
Met
CAT
[ENA]
¡û
>W1710616227
JEME01002439
Myxococcota
Sorangium cellulosum [JEME]
6754
6678
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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