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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18493 (77 seq.)
>WENV180697943
ODDE01012886
[ODDE] human metagenome; G_DNA_Supragingival plaque
1263
1353
+
Ser
GGA
[ENA]
¡û
>WENV180720722
ODGJ01114686
[ODGJ] human metagenome; G_DNA_Tongue dorsum
87
-1
-
Ser
GGA
[ENA]
¡û
>WENV180732495
ODGY01000857
[ODGY] human metagenome; G_DNA_Supragingival plaque
2573
2663
+
Ser
GGA
[ENA]
¡û
>WENV180734762
ODGZ01022107
[ODGZ] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV180739120
ODHD01006405
[ODHD] human metagenome; G_DNA_Supragingival plaque
1841
1931
+
Ser
GGA
[ENA]
¡û
>WENV180751198
ODHS01028463
[ODHS] human metagenome; G_DNA_Supragingival plaque
119
29
-
Ser
GGA
[ENA]
¡û
>WENV180755054
ODHU01010436
[ODHU] human metagenome; G_DNA_Supragingival plaque
1312
1402
+
Ser
GGA
[ENA]
¡û
>WENV180764994
ODIB01009755
[ODIB] human metagenome; G_DNA_Supragingival plaque
1208
1298
+
Ser
GGA
[ENA]
¡û
>WENV180778652
ODIM01029883
[ODIM] human metagenome; G_DNA_Supragingival plaque
434
524
+
Ser
GGA
[ENA]
¡û
>WENV180781752
ODIP01003105
[ODIP] human metagenome; G_DNA_Supragingival plaque
3717
3627
-
Ser
GGA
[ENA]
¡û
>WENV180796544
ODJB01006760
[ODJB] human metagenome; G_DNA_Supragingival plaque
3414
3324
-
Ser
GGA
[ENA]
¡û
>WENV180804159
ODJG01000751
[ODJG] human metagenome; G_DNA_Supragingival plaque
16204
16114
-
Ser
GGA
[ENA]
¡û
>WENV180810377
ODJK01260714
[ODJK] human metagenome; G_DNA_Subgingival plaque
21
111
+
Ser
GGA
[ENA]
¡û
>WENV180813611
ODJO01001416
[ODJO] human metagenome; G_DNA_Supragingival plaque
13513
13423
-
Ser
GGA
[ENA]
¡û
>WENV180822558
ODJT01004444
[ODJT] human metagenome; G_DNA_Supragingival plaque
1199
1289
+
Ser
GGA
[ENA]
¡û
>WENV180824804
ODJX01056003
[ODJX] human metagenome; G_DNA_Supragingival plaque
297
387
+
Ser
GGA
[ENA]
¡û
>WENV180843989
ODKN01022740
[ODKN] human metagenome; G_DNA_Supragingival plaque
206
116
-
Ser
GGA
[ENA]
¡û
>WENV180866183
ODLJ01006362
[ODLJ] human metagenome; G_DNA_Tongue dorsum
1448
1358
-
Ser
GGA
[ENA]
¡û
>WENV180881389
ODMA01000163
[ODMA] human metagenome; G_DNA_Supragingival plaque
1260
1350
+
Ser
GGA
[ENA]
¡û
>WENV180889329
ODMN01030478
[ODMN] human metagenome; G_DNA_Supragingival plaque
128
38
-
Ser
GGA
[ENA]
¡û
>WENV180891672
ODMQ01004598
[ODMQ] human metagenome; G_DNA_Supragingival plaque
1260
1350
+
Ser
GGA
[ENA]
¡û
>WENV180921739
ODTJ01000328
[ODTJ] human metagenome; G_DNA_Supragingival plaque
47376
47286
-
Ser
GGA
[ENA]
¡û
>WENV180923828
ODTK01000226
[ODTK] human metagenome; G_DNA_Supragingival plaque
46032
45942
-
Ser
GGA
[ENA]
¡û
>WENV180928443
ODTM01051399
[ODTM] human metagenome; G_DNA_Supragingival plaque
112
22
-
Ser
GGA
[ENA]
¡û
>WENV180933364
ODTR01000066
[ODTR] human metagenome; G_DNA_Supragingival plaque
1509
1599
+
Ser
GGA
[ENA]
¡û
>WENV180939299
ODTX01025132
[ODTX] human metagenome; G_DNA_Supragingival plaque
124
34
-
Ser
GGA
[ENA]
¡û
>WENV180958620
ODUL01014453
[ODUL] human metagenome; G_DNA_Supragingival plaque
877
787
-
Ser
GGA
[ENA]
¡û
>WENV180964741
ODUO01015319
[ODUO] human metagenome; G_DNA_Supragingival plaque
135
45
-
Ser
GGA
[ENA]
¡û
>WENV180972710
ODUW01000062
[ODUW] human metagenome; G_DNA_Supragingival plaque
1282
1372
+
Ser
GGA
[ENA]
¡û
>WENV180981490
ODVE01026364
[ODVE] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV180983719
ODVF01031065
[ODVF] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV180999504
ODVT01023585
[ODVT] human metagenome; G_DNA_Buccal mucosa
1317
1407
+
Ser
GGA
[ENA]
¡û
>WENV181002782
ODVX01001727
[ODVX] human metagenome; G_DNA_Supragingival plaque
12133
12043
-
Ser
GGA
[ENA]
¡û
>WENV181012634
ODWK01003138
[ODWK] human metagenome; G_DNA_Supragingival plaque
1282
1372
+
Ser
GGA
[ENA]
¡û
>WENV181019885
ODWU01021654
[ODWU] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV181029977
ODXF01015032
[ODXF] human metagenome; G_DNA_Supragingival plaque
117
27
-
Ser
GGA
[ENA]
¡û
>WENV181042646
ODXU01002061
[ODXU] human metagenome; G_DNA_Buccal mucosa
1260
1350
+
Ser
GGA
[ENA]
¡û
>WENV181050573
ODYD01027875
[ODYD] human metagenome; G_DNA_Supragingival plaque
119
29
-
Ser
GGA
[ENA]
¡û
>WENV181063999
ODYP01007461
[ODYP] human metagenome; G_DNA_Supragingival plaque
1341
1431
+
Ser
GGA
[ENA]
¡û
>WENV181068110
ODZI01128712
[ODZI] human metagenome; G_DNA_Supragingival plaque
248
338
+
Ser
GGA
[ENA]
¡û
>WENV181070826
OEAE01013065
[OEAE] human metagenome; G_DNA_Supragingival plaque
1207
1297
+
Ser
GGA
[ENA]
¡û
>WENV181077273
OEAP01037693
[OEAP] human metagenome; G_DNA_Supragingival plaque
108
18
-
Ser
GGA
[ENA]
¡û
>WENV181077676
OEAP01104545
[OEAP] human metagenome; G_DNA_Supragingival plaque
340
430
+
Ser
GGA
[ENA]
¡û
>WENV181080261
OEAS01035592
[OEAS] human metagenome; G_DNA_Supragingival plaque
1145
1235
+
Ser
GGA
[ENA]
¡û
>WENV181083825
OEAV01026354
[OEAV] human metagenome; G_DNA_Supragingival plaque
1259
1349
+
Ser
GGA
[ENA]
¡û
>WENV181090625
OEBC01001748
[OEBC] human metagenome; G_DNA_Supragingival plaque
7920
7830
-
Ser
GGA
[ENA]
¡û
>WENV181107851
OEEI01028016
[OEEI] human metagenome; G_DNA_Supragingival plaque
976
1066
+
Ser
GGA
[ENA]
¡û
>WENV181121803
OEFL01019611
[OEFL] human metagenome; G_DNA_Supragingival plaque
117
27
-
Ser
GGA
[ENA]
¡û
>WENV181124073
OEFQ01008486
[OEFQ] human metagenome; G_DNA_Supragingival plaque
1283
1373
+
Ser
GGA
[ENA]
¡û
>WENV181136073
OEGI01000458
[OEGI] human metagenome; G_DNA_Supragingival plaque
1282
1372
+
Ser
GGA
[ENA]
¡û
>WENV181137822
OEGJ01031295
[OEGJ] human metagenome; G_DNA_Supragingival plaque
907
817
-
Ser
GGA
[ENA]
¡û
>WENV181143180
OEHM01000194
[OEHM] human metagenome; G_DNA_Supragingival plaque
1259
1349
+
Ser
GGA
[ENA]
¡û
>WENV181146152
OEHQ01001356
[OEHQ] human metagenome; G_DNA_Supragingival plaque
9469
9379
-
Ser
GGA
[ENA]
¡û
>WENV181153128
OEIA01022915
[OEIA] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV181156637
OEIE01041165
[OEIE] human metagenome; G_DNA_Supragingival plaque
435
525
+
Ser
GGA
[ENA]
¡û
>WENV181158772
OEIH01009223
[OEIH] human metagenome; G_DNA_Supragingival plaque
437
347
-
Ser
GGA
[ENA]
¡û
>WENV181160746
OEIK01029454
[OEIK] human metagenome; G_DNA_Supragingival plaque
103
13
-
Ser
GGA
[ENA]
¡û
>WENV181177729
OEJS01013139
[OEJS] human metagenome; G_DNA_Supragingival plaque
1517
1607
+
Ser
GGA
[ENA]
¡û
>WENV181181252
OEJU01014061
[OEJU] human metagenome; G_DNA_Supragingival plaque
1145
1235
+
Ser
GGA
[ENA]
¡û
>WENV181182620
OEJV01022180
[OEJV] human metagenome; G_DNA_Supragingival plaque
197
107
-
Ser
GGA
[ENA]
¡û
>WENV183509565
OMHI01012766
[OMHI] human oral metagenome; human oral
502
592
+
Ser
GGA
[ENA]
¡û
>C181081289
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
1222164
1222074
-
Ser
GGA
-
¡û
>W09126585
ACJW02000005
Betaproteobacteria
Kingella oralis ATCC 51147 [ACJW]
163463
163553
+
Ser
GGA
[ENA]
¡û
>W1810052193
PDBT02000021
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
6088
5998
-
Ser
GGA
[ENA]
¡û
>W1810120634
PHTC01000025
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
6433
6343
-
Ser
GGA
[ENA]
¡û
>W1810390555
PXYY01000054
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
8832
8922
+
Ser
GGA
[ENA]
¡û
>W2010491500
JAAKDR010000038
Betaproteobacteria
Neisseria sp. ZJ785 [JAAKDR]
14769
14859
+
Ser
GGA
[ENA]
¡û
>W2010491522
JAAKDS010000006
Betaproteobacteria
Neisseria sp. ZJ930 [JAAKDS]
93395
93305
-
Ser
GGA
[ENA]
¡û
>W2011460790
RPFL01000002
Betaproteobacteria
Neisseria sp. 10009 [RPFL]
86314
86404
+
Ser
GGA
[ENA]
¡û
>W2011460836
RPFM01000002
Betaproteobacteria
Neisseria sp. 10011 [RPFM]
80249
80159
-
Ser
GGA
[ENA]
¡û
>W2012355481
WJXO01000002
Betaproteobacteria
Neisseria brasiliensis N.95.16 [WJXO]
216492
216402
-
Ser
GGA
[ENA]
¡û
>W2110303636
JADCLN010000006
Betaproteobacteria
Neisseria sp. ZJ930 [JADCLN]
93395
93305
-
Ser
GGA
[ENA]
¡û
>W2110413383
JAEHNZ010000002
Betaproteobacteria
Kingella bonacorsii Marseille-Q4569 [JAEHNZ]
429307
429397
+
Ser
GGA
[ENA]
¡û
>C211168942
CP062976
Betaproteobacteria
Neisseria sp. ZJ785 [CP062976]
1196785
1196875
+
Ser
GGA
-
¡û
>C231582178
CP116766
Betaproteobacteria
Neisseria sp. ZJ106 [CP116766]
1225222
1225312
+
Ser
GGA
-
¡û
>C241104764
CP046027
Betaproteobacteria
Neisseria brasiliensis N.177.16 [CP046027]
2336303
2336393
+
Ser
GGA
-
¡û
>C241178418
CP059569
Betaproteobacteria
Kingella oralis DSM 18271 [CP059569]
2231764
2231854
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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