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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185123 (84 seq.)
>WENV180153064
OAUR01000407
[OAUR] human gut metagenome; faeces
3538
3614
+
Arg
TCT
[ENA]
¢þ
>WENV180472782
OBYQ01001900
[OBYQ] human gut metagenome; faeces
1453
1529
+
Arg
TCT
[ENA]
¢þ
>WENV180492680
OBZX01000104
[OBZX] human gut metagenome; faeces
18083
18159
+
Arg
TCT
[ENA]
¢þ
>WENV180493024
OBZY01000109
[OBZY] human gut metagenome; faeces
27321
27245
-
Arg
TCT
[ENA]
¢þ
>WENV180498169
OCAG01000003
[OCAG] human gut metagenome; faeces
11094
11018
-
Arg
TCT
[ENA]
¢þ
>WENV180500592
OCAJ01000010
[OCAJ] human gut metagenome; faeces
127701
127777
+
Arg
TCT
[ENA]
¢þ
>WENV181118133
OEFH01005525
[OEFH] human metagenome; G_DNA_Stool
4397
4473
+
Arg
TCT
[ENA]
¢þ
>WENV181515493
OGGW01004368
[OGGW] metagenome; Human gut stool
5712
5636
-
Arg
TCT
[ENA]
¢þ
>WENV181561438
OGJD01002539
[OGJD] metagenome; Human gut stool
3166
3242
+
Arg
TCT
[ENA]
¢þ
>WENV181731656
OGQD01002038
[OGQD] human gut metagenome; faeces
10179
10255
+
Arg
TCT
[ENA]
¢þ
>WENV182354492
OIBN01010730
[OIBN] human gut metagenome; feces
175
99
-
Arg
TCT
[ENA]
¢þ
>WENV182600381
OJJG01002280
[OJJG] metagenome; faeces
124
48
-
Arg
TCT
[ENA]
¢þ
>WENV182943553
OKVI01000185
[OKVI] human gut metagenome; human gut
30361
30285
-
Arg
TCT
[ENA]
¢þ
>WENV183068171
OLIQ01002687
[OLIQ] metagenome; faeces
959
883
-
Arg
TCT
[ENA]
¢þ
>WENV183221953
OLQL01070192
[OLQL] human gut metagenome; faeces
128
204
+
Arg
TCT
[ENA]
¢þ
>WENV183238584
OLQZ01000613
[OLQZ] human gut metagenome; faeces
4670
4746
+
Arg
TCT
[ENA]
¢þ
>WENV183535138
OOAF01002750
[OOAF] human gut metagenome; human gut
6361
6285
-
Arg
TCT
[ENA]
¢þ
>C181083915
CP023531
Gammaproteobacteria
Escherichia coli FDAARGOS_401 [CP023531]
2097169
2097093
-
Arg
TCT
-
¡û
>C181150503
CP027355
Gammaproteobacteria
Escherichia coli 2013C-4991 [CP027355]
618335
618411
+
Arg
TCT
-
¡û
>C181150797
CP027363
Gammaproteobacteria
Escherichia coli 88-3001 [CP027363]
2527939
2528015
+
Arg
TCT
-
¡û
>C181150812
CP027363
Gammaproteobacteria
Escherichia coli 88-3001 [CP027363]
3872954
3873030
+
Arg
TCT
-
¡û
>C181150832
CP027363
Gammaproteobacteria
Escherichia coli 88-3001 [CP027363]
4561442
4561366
-
Arg
TCT
-
¡û
>C181150834
CP027363
Gammaproteobacteria
Escherichia coli 88-3001 [CP027363]
4472749
4472673
-
Arg
TCT
-
¡û
>C181192705
CP030778
Gammaproteobacteria
Escherichia albertii 05-3106 [CP030778]
918072
917996
-
Arg
TCT
-
¡û
>C191038470
CP025847
Gammaproteobacteria
Escherichia coli 602354 [CP025847]
3878460
3878536
+
Arg
TCT
-
¡û
>C191058346
CP028607
Gammaproteobacteria
Escherichia coli 143 [CP028607]
3637097
3637021
-
Arg
TCT
-
¡û
>C191091058
CP032515
Gammaproteobacteria
Escherichia coli 118UI [CP032515]
1505202
1505278
+
Arg
TCT
-
¡û
>C191131542
CP034799
Gammaproteobacteria
Escherichia coli 2009C-4687 [CP034799]
160794
160718
-
Arg
TCT
-
¡û
>C191131955
CP034808
Gammaproteobacteria
Escherichia coli 08-3914 [CP034808]
140504
140428
-
Arg
TCT
-
¡û
>C191155470
CP037941
Gammaproteobacteria
Escherichia coli CFSAN027350 [CP037941]
2766776
2766852
+
Arg
TCT
-
¡û
>C191156830
CP037997
Gammaproteobacteria
Shigella sonnei FC1653 [CP037997]
3329562
3329486
-
Arg
TCT
-
¡û
>C191184875
CP041002
Gammaproteobacteria
Escherichia coli FDAARGOS_772 [CP041002]
1340769
1340845
+
Arg
TCT
-
¡û
>W1910543548
FZJX01000020
Gammaproteobacteria
Escherichia coli [FZJX]
25682
25606
-
Arg
TCT
[ENA]
¡û
>W1910576788
JSXL01000092
Gammaproteobacteria
Escherichia coli NA057 [JSXL]
162673
162749
+
Arg
TCT
[ENA]
¡û
>W1911025493
NLRN01000016
Gammaproteobacteria
Escherichia coli MOD1-EC5176 [NLRN]
103331
103407
+
Arg
TCT
[ENA]
¡û
>W1911028008
NLSZ01000017
Gammaproteobacteria
Escherichia coli MOD1-EC5088 [NLSZ]
11623
11547
-
Arg
TCT
[ENA]
¡û
>W1911055399
NMHH01000038
Gammaproteobacteria
Escherichia coli MOD1-EC5940 [NMHH]
21664
21588
-
Arg
TCT
[ENA]
¡û
>W1911111270
NOGN01000046
Gammaproteobacteria
Escherichia coli MOD1-EC5141 [NOGN]
12714
12790
+
Arg
TCT
[ENA]
¡û
>W1510679890
CWUD01000300
Gammaproteobacteria
Shigella sonnei 26501ss_1 [CWUD]
1500
1576
+
Arg
TCT
[ENA]
¡û
>W1510680521
CWUM01000305
Gammaproteobacteria
Shigella sonnei 25201ss_1 [CWUM]
1985
2061
+
Arg
TCT
[ENA]
¡û
>W1510681185
CWUV01000187
Gammaproteobacteria
Shigella sonnei 201312273_1 [CWUV]
5952
6028
+
Arg
TCT
[ENA]
¡û
>W1510683653
CWWB01000188
Gammaproteobacteria
Shigella sonnei 201403955_1 [CWWB]
657
581
-
Arg
TCT
[ENA]
¡û
>W1510684352
CWWK01000187
Gammaproteobacteria
Shigella sonnei 201405327_1 [CWWK]
654
578
-
Arg
TCT
[ENA]
¡û
>W1510684941
CWWS01000002
Gammaproteobacteria
Shigella sonnei KY 2529 [CWWS]
12878
12802
-
Arg
TCT
[ENA]
¡û
>W1510684995
CWWS01000186
Gammaproteobacteria
Shigella sonnei KY 2529 [CWWS]
6006
6082
+
Arg
TCT
[ENA]
¡û
>W1510685674
CWXA01000195
Gammaproteobacteria
Shigella sonnei 20426787 [CWXA]
6006
6082
+
Arg
TCT
[ENA]
¡û
>W1510687767
CWYA01000200
Gammaproteobacteria
Shigella sonnei 20177848 [CWYA]
284
208
-
Arg
TCT
[ENA]
¡û
>W1510688685
CWYM01000229
Gammaproteobacteria
Shigella sonnei H101960391 [CWYM]
3662
3738
+
Arg
TCT
[ENA]
¡û
>W1510690195
CWZG01000193
Gammaproteobacteria
Shigella sonnei H132860550 [CWZG]
628
552
-
Arg
TCT
[ENA]
¡û
>W1510690664
CWZM01000290
Gammaproteobacteria
Shigella sonnei H140860383 [CWZM]
628
552
-
Arg
TCT
[ENA]
¡û
>W1510699470
CXEF01000307
Gammaproteobacteria
Shigella sonnei 20040880_1361372 [CXEF]
2677
2753
+
Arg
TCT
[ENA]
¡û
>W1510702616
CXFT01000275
Gammaproteobacteria
Shigella sonnei sh03-0995 [CXFT]
1802
1878
+
Arg
TCT
[ENA]
¡û
>W1510703802
CXGI01000275
Gammaproteobacteria
Shigella sonnei SS127858_2798529 [CXGI]
2264
2340
+
Arg
TCT
[ENA]
¡û
>W1510705283
CXHA01000350
Gammaproteobacteria
Shigella sonnei H113100099 [CXHA]
1175
1251
+
Arg
TCT
[ENA]
¡û
>W1510705361
CXHB01000257
Gammaproteobacteria
Shigella sonnei H112620255 [CXHB]
2264
2340
+
Arg
TCT
[ENA]
¡û
>W1510707298
CXHZ01000261
Gammaproteobacteria
Shigella sonnei 82205 [CXHZ]
2004
2080
+
Arg
TCT
[ENA]
¡û
>W1510709664
CXJC01000271
Gammaproteobacteria
Shigella sonnei 87026 [CXJC]
1997
2073
+
Arg
TCT
[ENA]
¡û
>W1510710849
CXJR01000191
Gammaproteobacteria
Shigella sonnei 93028 [CXJR]
5950
6026
+
Arg
TCT
[ENA]
¡û
>W1510711824
CXKD01000264
Gammaproteobacteria
Shigella sonnei 99382 [CXKD]
628
552
-
Arg
TCT
[ENA]
¡û
>W1510716564
CXMK01000236
Gammaproteobacteria
Shigella sonnei 92497962 [CXMK]
628
552
-
Arg
TCT
[ENA]
¡û
>W1510718925
CXNN01000193
Gammaproteobacteria
Shigella sonnei 144358 [CXNN]
624
548
-
Arg
TCT
[ENA]
¡û
>W1510727413
CXZY01000049
Gammaproteobacteria
Escherichia coli 204263_aEPEC [CXZY]
1381
1305
-
Arg
TCT
[ENA]
¡û
>W1510727415
CXZY01000066
Gammaproteobacteria
Escherichia coli 204263_aEPEC [CXZY]
3028
2952
-
Arg
TCT
[ENA]
¡û
>W1510727930
CYAG01000102
Gammaproteobacteria
Escherichia coli 503311 [CYAG]
2792
2868
+
Arg
TCT
[ENA]
¡û
>W1510727932
CYAG01000104
Gammaproteobacteria
Escherichia coli 503311 [CYAG]
661
585
-
Arg
TCT
[ENA]
¡û
>W1510727938
CYAG01000154
Gammaproteobacteria
Escherichia coli 503311 [CYAG]
180
256
+
Arg
TCT
[ENA]
¡û
>W1510728011
CYAH01000054
Gammaproteobacteria
Escherichia coli 500618_aEPEC [CYAH]
7048
6972
-
Arg
TCT
[ENA]
¡û
>W1510728013
CYAH01000056
Gammaproteobacteria
Escherichia coli 500618_aEPEC [CYAH]
2946
3022
+
Arg
TCT
[ENA]
¡û
>W1510730763
CYBN01000137
Gammaproteobacteria
Escherichia coli 201381_aEPEC [CYBN]
3521
3445
-
Arg
TCT
[ENA]
¡û
>W1510734307
CYDD01000169
Gammaproteobacteria
Escherichia coli 400897_aEPEC [CYDD]
721
645
-
Arg
TCT
[ENA]
¡û
>W1510734309
CYDD01000209
Gammaproteobacteria
Escherichia coli 400897_aEPEC [CYDD]
211
135
-
Arg
TCT
[ENA]
¡û
>W1510734557
CYDG01000197
Gammaproteobacteria
Escherichia coli 402227_aEPEC [CYDG]
923
999
+
Arg
TCT
[ENA]
¡û
>W1510734559
CYDG01000221
Gammaproteobacteria
Escherichia coli 402227_aEPEC [CYDG]
426
502
+
Arg
TCT
[ENA]
¡û
>W1510737180
CYEZ01000046
Gammaproteobacteria
Escherichia coli 302701 [CYEZ]
1381
1305
-
Arg
TCT
[ENA]
¡û
>W1510738553
CYFQ01000084
Gammaproteobacteria
Escherichia coli 401553 [CYFQ]
1319
1243
-
Arg
TCT
[ENA]
¡û
>W1511041842
JHSM01000058
Gammaproteobacteria
Escherichia coli 402310 [JHSM]
757
833
+
Arg
TCT
[ENA]
¡û
>W1511041844
JHSM01000066
Gammaproteobacteria
Escherichia coli 402310 [JHSM]
2270
2194
-
Arg
TCT
[ENA]
¡û
>W1511042581
JHSV01000084
Gammaproteobacteria
Escherichia coli 103447 [JHSV]
13965
14041
+
Arg
TCT
[ENA]
¡û
>W1511043786
JHTK01000064
Gammaproteobacteria
Escherichia coli 403341 [JHTK]
3180
3256
+
Arg
TCT
[ENA]
¡û
>W1511043789
JHTK01000065
Gammaproteobacteria
Escherichia coli 403341 [JHTK]
10711
10787
+
Arg
TCT
[ENA]
¡û
>W1511368135
JSGL01000119
Gammaproteobacteria
Escherichia coli upec-79 [JSGL]
25419
25343
-
Arg
TCT
[ENA]
¡û
>W1511373542
JSLP01000044
Gammaproteobacteria
Escherichia coli upec-197 [JSLP]
127345
127421
+
Arg
TCT
[ENA]
¡û
>W1511379736
JSPY01000090
Gammaproteobacteria
Escherichia coli blood-10-1310 [JSPY]
64778
64702
-
Arg
TCT
[ENA]
¡û
>W1511379782
JSPZ01000131
Gammaproteobacteria
Escherichia coli blood-10-1308 [JSPZ]
21913
21837
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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