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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185151 (30 seq.)
>C171071572
CP018024
Gammaproteobacteria
Alteromonas mediterranea CP48 [CP018024]
2854597
2854521
-
Arg
TCT
-
¡û
>C171071816
CP018031
Gammaproteobacteria
Alteromonas sp. RW2A1 [CP018031]
2853794
2853718
-
Arg
TCT
-
¡û
>C171103095
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
3922912
3922836
-
Arg
TCT
-
¡û
>WENV180359169
OBNR01012929
[OBNR] marine metagenome; Seawater_00002010_00002149
278
354
+
Arg
TCT
[ENA]
¢þ
>WENV180360478
OBNU01000129
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
3944
4020
+
Arg
TCT
[ENA]
¢þ
>WENV180366152
OBOC01159419
[OBOC] marine metagenome; ocean water
334
258
-
Arg
TCT
[ENA]
¢þ
>WENV180370352
OBOH01078462
[OBOH] marine metagenome; ENVO:00002010
191
267
+
Arg
TCT
[ENA]
¢þ
>WENV180384350
OBOX01017242
[OBOX] marine metagenome; Sterile flask
479
403
-
Arg
TCT
[ENA]
¢þ
>WENV180394397
OBPS01003661
[OBPS] marine metagenome; ENVO:00002010 seawater
850
926
+
Arg
TCT
[ENA]
¢þ
>WENV180395276
OBPT01005808
[OBPT] marine metagenome; ENVO:00002010 seawater
532
456
-
Arg
TCT
[ENA]
¢þ
>WENV180636403
OCRF01004083
[OCRF] marine metagenome; niskin bottle
980
1056
+
Arg
TCT
[ENA]
¢þ
>WENV181120785
OEFK01058116
[OEFK] marine metagenome; ENVO:00002010 seawater
292
216
-
Arg
TCT
[ENA]
¢þ
>WENV183699583
OZSS01034440
[OZSS] metagenome; Seawater sample
1344
1420
+
Arg
TCT
[ENA]
¢þ
>WENV183746787
PPCM01000008
[PPCM] marine sediment metagenome; marine sediment
709331
709407
+
Arg
TCT
[ENA]
¢þ
>WENV170202967
CEPS01015403
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
208
132
-
Arg
TCT
[ENA]
¢þ
>WENV170281157
CERS01023259
[CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2159
2235
+
Arg
TCT
[ENA]
¢þ
>WENV170597987
FUWD010022021
[FUWD] metagenome; unknown
163
239
+
Arg
TCT
[ENA]
¢þ
>WENV170615825
FUWD012869583
[FUWD] metagenome; unknown
140
216
+
Arg
TCT
[ENA]
¢þ
>WENV170646754
JQIA01002728
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1
77
+
Arg
TCT
[ENA]
¢þ
>WENV170749916
LUMF01019205
[LUMF] marine metagenome; Red Sea water column Station 34 - depth 100m
514
590
+
Arg
TCT
[ENA]
¢þ
>WENV170818974
MDSX01083135
[MDSX] marine metagenome; seawater
225
149
-
Arg
TCT
[ENA]
¢þ
>C181177239
CP029347
Gammaproteobacteria
Saliniradius amylolyticus HMF8227 [CP029347]
2266885
2266809
-
Arg
TCT
-
¡û
>C191172220
CP039852
Gammaproteobacteria
Salinimonas iocasae KX18D6 [CP039852]
1292028
1292104
+
Arg
TCT
-
¡û
>W1810658754
QJJN01000008
Gammaproteobacteria
Alteromonas sp. I10 [QJJN]
103820
103744
-
Arg
TCT
[ENA]
¡û
>WENV033488
AACY021533217
Marine microbial communities from Global Ocean Sampling (GOS)
595
517
-
Arg
TCT
[ENA]
>W1511483643
JWLY01000005
Gammaproteobacteria
Alteromonas macleodii AD037 [JWLY]
177094
177170
+
Arg
TCT
[ENA]
¡û
>W11138362
AEIG01000056
Gammaproteobacteria
Aequoribacter fuscus IMCC3088 [AEIG]
128
204
+
Arg
TCT
[ENA]
¡û
>C161040565
CP012202
Gammaproteobacteria
Alteromonas macleodii HOT1A3 [CP012202]
3066387
3066311
-
Arg
TCT
-
¡û
>C161071129
CP014323
Gammaproteobacteria
Alteromonas macleodii D7 [CP014323]
3076825
3076749
-
Arg
TCT
[Ensembl]
¡û
>C131014231
CP004848
Gammaproteobacteria
Alteromonas mediterranea MED64 [CP004848]
2902977
2902901
-
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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