This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185321 (100 seq.)
>W131217671
ATXA01000011
Actinomycetota
Frankia sp. Iso899 [ATXA]
106029
106103
+
Met
CAT
[ENA]
¡û
>W1711491890
MKJY01000266
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
15029
15105
+
Met
CAT
[ENA]
¡û
>W1711575818
MNJN01000015
Actinomycetota
Catenulispora sp. 13_1_20CM_3_70_7 [MNJN]
9072
9148
+
Met
CAT
[ENA]
¡û
>W131170532
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
2027945
2028021
+
Met
CAT
[ENA]
¡û
>WENV180030350
FTJM01000510
[FTJM] metagenome; soil
1834
1759
-
Met
CAT
[ENA]
¡û
>WENV181371638
OFQV01030191
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
252
326
+
Met
CAT
[ENA]
¡û
>WENV181375423
OFQY01089317
[OFQY] wastewater metagenome; Exp Tend VB 10WW
410
336
-
Met
CAT
[ENA]
¡û
>WENV181378657
OFRB01044898
[OFRB] wastewater metagenome; Exp Tend CN 0WW
299
225
-
Met
CAT
[ENA]
¡û
>W141140028
AWOO02000003
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
247549
247473
-
Met
CAT
[ENA]
¡û
>W141750806
JNSE01000020
Actinomycetota
actinobacterium acAMD-2 [JNSE]
5585
5661
+
Met
CAT
[ENA]
¡û
>W141768707
JOFJ01000016
Actinomycetota
Spirillospora albida [JOFJ]
2640
2716
+
Met
CAT
[ENA]
¡û
>W1910547237
FZNP01000015
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
34133
34059
-
Met
CAT
[ENA]
¡û
>W1910548639
FZOR01000002
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
262839
262765
-
Met
CAT
[ENA]
¡û
>W1910803662
MTBP01000002
Actinomycetota
Actinomadura sp. RB29 [MTBP]
1948863
1948789
-
Met
CAT
[ENA]
¡û
>W1911678944
QHJN01000008
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
89823
89749
-
Met
CAT
[ENA]
¡û
>W1810368687
PVZV01000001
Actinomycetota
Actinocorallia populi A251 [PVZV]
1311969
1312043
+
Met
CAT
[ENA]
¡û
>W1810861262
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
3925203
3925277
+
Met
CAT
[ENA]
¡û
>W1810888889
QURH01000229
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
7756
7830
+
Met
CAT
[ENA]
¡û
>W1810913810
QVNQ01000002
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
229920
229994
+
Met
CAT
[ENA]
¡û
>W2010076586
BDDE01000013
Actinomycetota
Actinomadura sp. K4S16 K4S161 [BDDE]
52854
52780
-
Met
CAT
[ENA]
¡û
>W2010148800
CAACUY010000012
Actinomycetota
Actinomadura fibrosa [CAACUY]
59478
59404
-
Met
CAT
[ENA]
¡û
>W2010148878
CAACUZ010000012
Actinomycetota
Actinomadura formosensis [CAACUZ]
42013
42087
+
Met
CAT
[ENA]
¡û
>W2010148919
CAACVB010000004
Actinomycetota
Actinomadura sp. LMG 30035 [CAACVB]
70838
70912
+
Met
CAT
[ENA]
¡û
>W2010428998
FZNP01000015
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
34133
34059
-
Met
CAT
[ENA]
¡û
>W2010446248
JAABOU010000098
Actinomycetota
Actinomadura sp. DSM 109109 [JAABOU]
5590
5516
-
Met
CAT
[ENA]
¡û
>W2010580813
JAAXPI010000002
Actinomycetota
Actinomadura latina ATCC BAA-277 [JAAXPI]
54133
54059
-
Met
CAT
[ENA]
¡û
>W2010670488
JACCBA010000001
Actinomycetota
Actinomadura luteofluorescens DSM 40398 [JACCBA]
5425237
5425311
+
Met
CAT
[ENA]
¡û
>W2010671445
JACCBT010000001
Actinomycetota
Actinomadura citrea DSM 43461 [JACCBT]
8339942
8339868
-
Met
CAT
[ENA]
¡û
>W2010710097
JACHMQ010000001
Actinomycetota
Actinomadura coerulea DSM 43675 [JACHMQ]
5301549
5301475
-
Met
CAT
[ENA]
¡û
>W2010710366
JACHMV010000001
Actinomycetota
Actinomadura catellatispora DSM 44772 [JACHMV]
7381910
7381836
-
Met
CAT
[ENA]
¡û
>W2010740278
JACJIA010000028
Actinomycetota
Actinomadura namibiensis DSM 44197 [JACJIA]
4556
4482
-
Met
CAT
[ENA]
¡û
>W2010911484
MTBP01000002
Actinomycetota
Actinomadura sp. RB29 [MTBP]
1948863
1948789
-
Met
CAT
[ENA]
¡û
>W2011256009
QHJN01000008
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
89823
89749
-
Met
CAT
[ENA]
¡û
>W2011388381
RBWU01000002
Actinomycetota
Actinomadura pelletieri DSM 43383 [RBWU]
6572
6646
+
Met
CAT
[ENA]
¡û
>W2011416170
RFFG01000002
Actinomycetota
Actinomadura sp. NEAU-Ht49 [RFFG]
47583
47509
-
Met
CAT
[ENA]
¡û
>W2011433010
RJKE01000001
Actinomycetota
Actinocorallia herbida DSM 44254 [RJKE]
9615511
9615585
+
Met
CAT
[ENA]
¡û
>W2011486475
RRYT01000001
Actinomycetota
Thermomonospora catenispora 3-22-3 [RRYT]
261779
261705
-
Met
CAT
[ENA]
¡û
>W2011635161
SMJW01000119
Actinomycetota
Actinomadura bangladeshensis DSM 45347 [SMJW]
20546
20620
+
Met
CAT
[ENA]
¡û
>W2011635237
SMJX01000161
Actinomycetota
Actinomadura sp. KC216 [SMJX]
1728
1802
+
Met
CAT
[ENA]
¡û
>W2011635491
SMKB01000195
Actinomycetota
Actinomadura sp. 7K534 [SMKB]
10018
10092
+
Met
CAT
[ENA]
¡û
>W2011635762
SMKH01000020
Actinomycetota
Actinomadura sp. KC345 [SMKH]
38179
38105
-
Met
CAT
[ENA]
¡û
>W2011635921
SMKK01000017
Actinomycetota
Actinomadura sp. 7K507 [SMKK]
38620
38694
+
Met
CAT
[ENA]
¡û
>W2011636057
SMKM01000181
Actinomycetota
Actinomadura sp. GC306 [SMKM]
10364
10438
+
Met
CAT
[ENA]
¡û
>W2011636421
SMKT01000004
Actinomycetota
Actinomadura sp. KC06 [SMKT]
115230
115156
-
Met
CAT
[ENA]
¡û
>W2011636523
SMKU01000272
Actinomycetota
Actinomadura sp. H3C3 [SMKU]
5747
5821
+
Met
CAT
[ENA]
¡û
>W2011636752
SMKY01000264
Actinomycetota
Actinomadura darangshiensis DSM 45941 [SMKY]
3411
3337
-
Met
CAT
[ENA]
¡û
>W2011636917
SMLC01000032
Actinomycetota
Actinomadura sp. 6K520 [SMLC]
9991
10065
+
Met
CAT
[ENA]
¡û
>W2011757164
UAPP01000009
Actinomycetota
Actinomadura madurae NCTC11373 [UAPP]
209770
209696
-
Met
CAT
[ENA]
¡û
>W2011975837
VCKW01000023
Actinomycetota
Actinomadura sp. 14C53 [VCKW]
5401
5475
+
Met
CAT
[ENA]
¡û
>W2011976052
VCKZ01000385
Actinomycetota
Actinomadura geliboluensis A8036 [VCKZ]
2675
2601
-
Met
CAT
[ENA]
¡û
>W2012021840
VFPO01000001
Actinomycetota
Actinomadura hallensis DSM 45043 [VFPO]
5960075
5960001
-
Met
CAT
[ENA]
¡û
>W2012129920
VSFF01000001
Actinomycetota
Actinomadura syzygii GKU157 [VSFF]
82332
82258
-
Met
CAT
[ENA]
¡û
>W2012129995
VSFG01000001
Actinomycetota
Actinomadura chibensis JCM 14158 [VSFG]
1207776
1207702
-
Met
CAT
[ENA]
¡û
>W2012132047
VSRQ01000005
Actinomycetota
Actinomadura sp. CYP1-5 [VSRQ]
613236
613310
+
Met
CAT
[ENA]
¡û
>W2012229683
WBMR01000030
Actinomycetota
Actinomadura montaniterrae CYP1-1B [WBMR]
21945
21871
-
Met
CAT
[ENA]
¡û
>W2012229796
WBMS02000041
Actinomycetota
Actinomadura sp. LD22 [WBMS]
42834
42908
+
Met
CAT
[ENA]
¡û
>W2012229823
WBMT01000003
Actinomycetota
Actinomadura rudentiformis HMC1 [WBMT]
32127
32053
-
Met
CAT
[ENA]
¡û
>W2012308175
WEGH01000002
Actinomycetota
Actinomadura sp. RB68 [WEGH]
1917875
1917949
+
Met
CAT
[ENA]
¡û
>W2012337049
WING01000001
Actinomycetota
Actinomadura sp. J1-007 [WING]
4087118
4087192
+
Met
CAT
[ENA]
¡û
>W2012405904
WOFH01000011
Actinomycetota
Actinomadura sp. NEAU-AAG5 [WOFH]
347963
347889
-
Met
CAT
[ENA]
¡û
>W2012446587
WUTW01000001
Actinomycetota
Actinomadura rayongensis DSM 102126 [WUTW]
203207
203281
+
Met
CAT
[ENA]
¡û
>W2110037862
BMRD01000021
Actinomycetota
Actinomadura citrea JCM 3295 [BMRD]
34386
34312
-
Met
CAT
[ENA]
¡û
>W2110037969
BMRF01000005
Actinomycetota
Actinomadura cremea JCM 3308 [BMRF]
279825
279751
-
Met
CAT
[ENA]
¡û
>W2110038099
BMRH01000021
Actinomycetota
Actinomadura coerulea JCM 3320 [BMRH]
136462
136536
+
Met
CAT
[ENA]
¡û
>W2110038528
BMRO01000013
Actinomycetota
Actinomadura livida JCM 3387 [BMRO]
237788
237862
+
Met
CAT
[ENA]
¡û
>W2110137165
JAACYW010000040
Actinomycetota
Catenulispora rubra DSM 44948 [JAACYW]
10575
10649
+
Met
CAT
[ENA]
¡û
>W2110203302
JACEGJ010000107
Actinomycetota
Catenulispora sp. NF23 [JACEGJ]
3049
2975
-
Met
CAT
[ENA]
¡û
>W2110300724
JADBDZ010000001
Actinomycetota
Actinomadura algeriensis DSM 46744 [JADBDZ]
1598256
1598182
-
Met
CAT
[ENA]
¡û
>W2110362694
JADOUA010000001
Actinomycetota
Actinomadura viridis DSM 43175 [JADOUA]
554150
554224
+
Met
CAT
[ENA]
¡û
>W2110523795
JAGEOJ010000013
Actinomycetota
Actinomadura barringtoniae GKU 128 [JAGEOJ]
33034
32960
-
Met
CAT
[ENA]
¡û
>W2110523848
JAGEOK010000013
Actinomycetota
Actinomadura nitritigenes L46 [JAGEOK]
247312
247238
-
Met
CAT
[ENA]
¡û
>W2110523969
JAGEPF010000013
Actinomycetota
Actinomadura sp. LCR2-06 [JAGEPF]
54140
54066
-
Met
CAT
[ENA]
¡û
>W2110600863
JAHFZY010000004
Actinomycetota
Actinomadura sp. NEAU-AAG7 [JAHFZY]
156588
156662
+
Met
CAT
[ENA]
¡û
>W2110668546
JAIBOA010000014
Actinomycetota
Actinomadura sp. PM05-2 [JAIBOA]
173460
173534
+
Met
CAT
[ENA]
¡û
>C231083280
CP059572
Actinomycetota
Actinomadura graeca 32-07 [CP059572]
5453632
5453706
+
Met
CAT
-
¡û
>C231342182
CP094265
Actinomycetota
Actinomadura madurae MRC008 [CP094265]
6611995
6612069
+
Met
CAT
-
¡û
>C231342262
CP094266
Actinomycetota
Actinomadura madurae MRC005 [CP094266]
8635645
8635719
+
Met
CAT
-
¡û
>C231382809
CP097332
Actinomycetota
Jatrophihabitans telluris N237 [CP097332]
3758587
3758512
-
Met
CAT
-
¡û
>C241088941
CP044407
Actinomycetota
Actinomadura sp. WMMB 499 WMMB499 [CP044407]
5523036
5523110
+
Met
CAT
-
¡û
>W2130010085
JAAFYZ010000138
Actinomycetota
Catenulispora sp. NL8 [JAAFYZ]
4360
4286
-
Met
CAT
[ENA]
¡û
>W2130010110
JAAFZA010000035
Actinomycetota
Catenulispora pinisilvae NH11 [JAAFZA]
27706
27780
+
Met
CAT
[ENA]
¡û
>C241170409
CP054932
Actinomycetota
Actinomadura sp. NAK00032 [CP054932]
8584134
8584060
-
Met
CAT
-
¡û
>C241203407
CP107927
Actinomycetota
Spirillospora sp. NBC_00431 [CP107927]
22839
22913
+
Met
CAT
-
¡û
>C10102548
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
1044085
1044159
+
Met
CAT
[Ensembl]
¡û
>W2310029545
BSTM01000022
Actinomycetota
Actinomadura sp. NBRC 104412 [BSTM]
94663
94737
+
Met
CAT
[ENA]
¡û
>W1510456328
CPWZ01000029
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
28570
28646
+
Met
CAT
[ENA]
¡û
>W1610067462
BCQP01000017
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
338104
338028
-
Met
CAT
[ENA]
¡û
>W1610067521
BCQQ01000023
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
53758
53682
-
Met
CAT
[ENA]
¡û
>W1610067562
BCQR01000009
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
26594
26518
-
Met
CAT
[ENA]
¡û
>W1610067634
BCQS01000003
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
759668
759744
+
Met
CAT
[ENA]
¡û
>W1610067731
BCQT01000022
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
34343
34267
-
Met
CAT
[ENA]
¡û
>W1610068762
BCRO01000077
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
59575
59499
-
Met
CAT
[ENA]
¡û
>W1710064835
BCQP01000017
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
338104
338028
-
Met
CAT
[ENA]
¡û
>W1710064894
BCQQ01000023
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
53758
53682
-
Met
CAT
[ENA]
¡û
>W1710064935
BCQR01000009
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
26594
26518
-
Met
CAT
[ENA]
¡û
>W1710065007
BCQS01000003
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
759668
759744
+
Met
CAT
[ENA]
¡û
>W1710065104
BCQT01000022
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
34343
34267
-
Met
CAT
[ENA]
¡û
>W1710066135
BCRO01000077
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
59575
59499
-
Met
CAT
[ENA]
¡û
>W1710539609
FNVO01000004
Actinomycetota
Thermomonospora echinospora [FNVO]
381180
381256
+
Met
CAT
[ENA]
¡û
>W1710570648
FOVH01000004
Actinomycetota
Actinomadura madurae [FOVH]
30512
30436
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK