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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18535 (73 seq.)
>W1710821338
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
527477
527387
-
Ser
CGA
[ENA]
¡û
>W1711107349
LTSS01000020
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
49794
49884
+
Ser
CGA
[ENA]
¡û
>W131204416
ATBY01000017
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
491198
491108
-
Ser
CGA
[ENA]
¡û
>W131221638
AUAQ01000011
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
172531
172621
+
Ser
CGA
[ENA]
¡û
>W141042461
AMEM01000033
Actinomycetota
Corynebacterium durum F0235 [AMEM]
21473
21383
-
Ser
CGA
[ENA]
¡û
>WENV180698234
ODDE01102283
[ODDE] human metagenome; G_DNA_Supragingival plaque
3
93
+
Ser
CGA
[ENA]
¡û
>WENV180731356
ODGW01000170
[ODGW] human metagenome; G_DNA_Supragingival plaque
2822
2912
+
Ser
CGA
[ENA]
¡û
>WENV180733861
ODGZ01001099
[ODGZ] human metagenome; G_DNA_Supragingival plaque
3074
3164
+
Ser
CGA
[ENA]
¡û
>WENV180735740
ODHB01000499
[ODHB] human metagenome; G_DNA_Supragingival plaque
2594
2684
+
Ser
CGA
[ENA]
¡û
>WENV180738755
ODHD01000439
[ODHD] human metagenome; G_DNA_Supragingival plaque
3628
3718
+
Ser
CGA
[ENA]
¡û
>WENV180750187
ODHS01000694
[ODHS] human metagenome; G_DNA_Supragingival plaque
6818
6908
+
Ser
CGA
[ENA]
¡û
>WENV180754739
ODHU01000498
[ODHU] human metagenome; G_DNA_Supragingival plaque
3020
3110
+
Ser
CGA
[ENA]
¡û
>WENV180777455
ODIL01007921
[ODIL] human metagenome; G_DNA_Supragingival plaque
819
909
+
Ser
CGA
[ENA]
¡û
>WENV180782368
ODIP01121480
[ODIP] human metagenome; G_DNA_Supragingival plaque
3
93
+
Ser
CGA
[ENA]
¡û
>WENV180800837
ODJD01001621
[ODJD] human metagenome; G_DNA_Supragingival plaque
7392
7302
-
Ser
CGA
[ENA]
¡û
>WENV180813596
ODJO01001320
[ODJO] human metagenome; G_DNA_Supragingival plaque
2
92
+
Ser
CGA
[ENA]
¡û
>WENV180832699
ODKC01003286
[ODKC] human metagenome; G_DNA_Supragingival plaque
6660
6750
+
Ser
CGA
[ENA]
¡û
>WENV180833968
ODKD01001380
[ODKD] human metagenome; G_DNA_Supragingival plaque
967
877
-
Ser
CGA
[ENA]
¡û
>WENV180888237
ODMN01000270
[ODMN] human metagenome; G_DNA_Supragingival plaque
6686
6776
+
Ser
CGA
[ENA]
¡û
>WENV180891601
ODMQ01002040
[ODMQ] human metagenome; G_DNA_Supragingival plaque
1285
1375
+
Ser
CGA
[ENA]
¡û
>WENV180922540
ODTJ01005390
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4957
4867
-
Ser
CGA
[ENA]
¡û
>WENV180923825
ODTK01000217
[ODTK] human metagenome; G_DNA_Supragingival plaque
12633
12543
-
Ser
CGA
[ENA]
¡û
>WENV180927589
ODTM01001534
[ODTM] human metagenome; G_DNA_Supragingival plaque
3021
3111
+
Ser
CGA
[ENA]
¡û
>WENV180933314
ODTR01000022
[ODTR] human metagenome; G_DNA_Supragingival plaque
84554
84644
+
Ser
CGA
[ENA]
¡û
>WENV180934558
ODTS01000408
[ODTS] human metagenome; G_DNA_Subgingival plaque
2932
3022
+
Ser
CGA
[ENA]
¡û
>WENV180937700
ODTX01000031
[ODTX] human metagenome; G_DNA_Supragingival plaque
25992
25902
-
Ser
CGA
[ENA]
¡û
>WENV180943148
ODUC01000004
[ODUC] human metagenome; G_DNA_Supragingival plaque
135790
135880
+
Ser
CGA
[ENA]
¡û
>WENV180958485
ODUL01006272
[ODUL] human metagenome; G_DNA_Supragingival plaque
338
428
+
Ser
CGA
[ENA]
¡û
>WENV180973019
ODUW01000851
[ODUW] human metagenome; G_DNA_Supragingival plaque
9166
9076
-
Ser
CGA
[ENA]
¡û
>WENV180980518
ODVE01000320
[ODVE] human metagenome; G_DNA_Supragingival plaque
11729
11819
+
Ser
CGA
[ENA]
¡û
>WENV180982879
ODVF01001282
[ODVF] human metagenome; G_DNA_Supragingival plaque
12503
12413
-
Ser
CGA
[ENA]
¡û
>WENV180986899
ODVK01001834
[ODVK] human metagenome; G_DNA_Supragingival plaque
629
719
+
Ser
CGA
[ENA]
¡û
>WENV181008339
ODWE01004109
[ODWE] human metagenome; G_DNA_Supragingival plaque
6792
6882
+
Ser
CGA
[ENA]
¡û
>WENV181012408
ODWK01000190
[ODWK] human metagenome; G_DNA_Supragingival plaque
8014
8104
+
Ser
CGA
[ENA]
¡û
>WENV181020038
ODWU01040325
[ODWU] human metagenome; G_DNA_Supragingival plaque
322
412
+
Ser
CGA
[ENA]
¡û
>WENV181029489
ODXF01000408
[ODXF] human metagenome; G_DNA_Supragingival plaque
6483
6573
+
Ser
CGA
[ENA]
¡û
>WENV181049546
ODYD01000531
[ODYD] human metagenome; G_DNA_Supragingival plaque
6818
6908
+
Ser
CGA
[ENA]
¡û
>WENV181063445
ODYP01000841
[ODYP] human metagenome; G_DNA_Supragingival plaque
9357
9447
+
Ser
CGA
[ENA]
¡û
>WENV181082147
OEAT01000011
[OEAT] human metagenome; G_DNA_Supragingival plaque
134011
134101
+
Ser
CGA
[ENA]
¡û
>WENV181083312
OEAV01004911
[OEAV] human metagenome; G_DNA_Supragingival plaque
1935
1845
-
Ser
CGA
[ENA]
¡û
>WENV181106907
OEEI01000619
[OEEI] human metagenome; G_DNA_Supragingival plaque
12690
12600
-
Ser
CGA
[ENA]
¡û
>WENV181121749
OEFL01017191
[OEFL] human metagenome; G_DNA_Supragingival plaque
1252
1162
-
Ser
CGA
[ENA]
¡û
>WENV181124071
OEFQ01008442
[OEFQ] human metagenome; G_DNA_Supragingival plaque
322
412
+
Ser
CGA
[ENA]
¡û
>WENV181143006
OEHM01000044
[OEHM] human metagenome; G_DNA_Supragingival plaque
138430
138340
-
Ser
CGA
[ENA]
¡û
>WENV181151985
OEIA01000007
[OEIA] human metagenome; G_DNA_Supragingival plaque
2
92
+
Ser
CGA
[ENA]
¡û
>WENV181179047
OEJT01001063
[OEJT] human metagenome; G_DNA_Supragingival plaque
11909
11819
-
Ser
CGA
[ENA]
¡û
>WENV181180727
OEJU01000893
[OEJU] human metagenome; G_DNA_Supragingival plaque
2613
2703
+
Ser
CGA
[ENA]
¡û
>WENV181181787
OEJV01000230
[OEJV] human metagenome; G_DNA_Supragingival plaque
23026
22936
-
Ser
CGA
[ENA]
¡û
>WENV182644284
OJLW01018806
[OJLW] metagenome; surface
573
483
-
Ser
CGA
[ENA]
¡û
>WENV182645308
OJLY01008561
[OJLY] metagenome; surface
232
322
+
Ser
CGA
[ENA]
¡û
>C191114568
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
2827243
2827153
-
Ser
CGA
-
¡û
>W09113390
ABYP01000006
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
11034
10944
-
Ser
CGA
[ENA]
¡û
>W09123816
ACHF01000014
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
10922
10832
-
Ser
CGA
[ENA]
¡û
>W1910442364
FWFE01000031
Actinomycetota
Corynebacterium sp. JB4 [FWFE]
14647
14557
-
Ser
CGA
[ENA]
¡û
>W1810118385
PHQP01000015
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
18989
18899
-
Ser
CGA
[ENA]
¡û
>W1810187407
PKHO01000005
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
115728
115818
+
Ser
CGA
[ENA]
¡û
>W1810623560
QHCV01000009
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
19601
19511
-
Ser
CGA
[ENA]
¡û
>W2010674929
JACCFR010000001
Actinomycetota
Corynebacterium durum DSM 45333 [JACCFR]
2202984
2203074
+
Ser
CGA
[ENA]
¡û
>W2012103222
VOHM01000019
Actinomycetota
Corynebacterium canis CCUG 58627 [VOHM]
24067
24157
+
Ser
CGA
[ENA]
¡û
>W2110239708
JACMYD010000007
Actinomycetota
Corynebacterium sp. zg-331 [JACMYD]
72821
72733
-
Ser
CGA
[ENA]
¡û
>W2110416647
JAEIOS010000013
Actinomycetota
Corynebacterium sp. CCM 8863 [JAEIOS]
219003
219093
+
Ser
CGA
[ENA]
¡û
>W2110416673
JAEIOT010000004
Actinomycetota
Corynebacterium sp. CCM 8864 [JAEIOT]
333324
333234
-
Ser
CGA
[ENA]
¡û
>W2110434083
JAENIP010000012
Actinomycetota
Corynebacterium sp. CCM 8835 [JAENIP]
157459
157369
-
Ser
CGA
[ENA]
¡û
>W2110508991
JAFLEQ010000008
Actinomycetota
Corynebacterium sp. CCM 8862 [JAFLEQ]
66977
67067
+
Ser
CGA
[ENA]
¡û
>W2110647906
JAHUTN010000006
Actinomycetota
Corynebacterium sp. TAE3-ERU16 [JAHUTN]
64473
64563
+
Ser
CGA
[ENA]
¡û
>C211219873
CP066007
Actinomycetota
Corynebacterium glucuronolyticum FDAARGOS_1053 [CP066007]
302562
302472
-
Ser
CGA
-
¡û
>C211243869
CP068162
Actinomycetota
Corynebacterium glucuronolyticum FDAARGOS_1111 [CP068162]
2677923
2677833
-
Ser
CGA
-
¡û
>C211261500
CP069485
Actinomycetota
Corynebacterium glucuronolyticum FDAARGOS_1190 [CP069485]
1957125
1957035
-
Ser
CGA
-
¡û
>C211262933
CP069534
Actinomycetota
Corynebacterium glucuronolyticum FDAARGOS_1191 [CP069534]
307675
307765
+
Ser
CGA
-
¡û
>W2110740476
JNUV01000002
Actinomycetota
Corynebacterium glucuronolyticum DSM 44120 [JNUV]
134902
134992
+
Ser
CGA
[ENA]
¡û
>C231095779
CP063191
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [CP063191]
2235461
2235371
-
Ser
CGA
-
¡û
>W2130026554
JAENIQ010000008
Actinomycetota
Corynebacterium sp. CCM 8836 [JAENIQ]
159570
159480
-
Ser
CGA
[ENA]
¡û
>W1710605197
FWWS01000002
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
134902
134992
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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