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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18548 (25 seq.)
>W131095764
AOPM01000091
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
1419
1509
+
Ser
GGA
[ENA]
¡û
>WENV170454300
CEVA01030536
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1590
1680
+
Ser
GGA
[ENA]
¡û
>W1810248826
PQBV01000037
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
83129
83039
-
Ser
GGA
[ENA]
¡û
>W1810249124
PQBY01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
86543
86453
-
Ser
GGA
[ENA]
¡û
>W1810249507
PQCC01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
83345
83255
-
Ser
GGA
[ENA]
¡û
>W1810249546
PQCD01000036
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
21774
21864
+
Ser
GGA
[ENA]
¡û
>W1810249637
PQCE01000007
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
65805
65715
-
Ser
GGA
[ENA]
¡û
>W1810249740
PQCF01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
95996
96086
+
Ser
GGA
[ENA]
¡û
>W2011198834
PNBS01000051
Gammaproteobacteria
Pseudoalteromonas ruthenica S4388 [PNBS]
1373
1463
+
Ser
GGA
[ENA]
¡û
>W2011198908
PNBT01000023
Gammaproteobacteria
Pseudoalteromonas ruthenica S4382 [PNBT]
46715
46625
-
Ser
GGA
[ENA]
¡û
>W2011199406
PNCA01000008
Gammaproteobacteria
Pseudoalteromonas ruthenica S3257 [PNCA]
344234
344144
-
Ser
GGA
[ENA]
¡û
>W2011199473
PNCB01000011
Gammaproteobacteria
Pseudoalteromonas ruthenica S3245 [PNCB]
43220
43310
+
Ser
GGA
[ENA]
¡û
>W2011199581
PNCC01000070
Gammaproteobacteria
Pseudoalteromonas ruthenica S3138 [PNCC]
579
489
-
Ser
GGA
[ENA]
¡û
>W2011199632
PNCD01000051
Gammaproteobacteria
Pseudoalteromonas ruthenica S3136 [PNCD]
580
490
-
Ser
GGA
[ENA]
¡û
>W2011199681
PNCE01000064
Gammaproteobacteria
Pseudoalteromonas ruthenica S2899 [PNCE]
335
245
-
Ser
GGA
[ENA]
¡û
>W2011199695
PNCF01000011
Gammaproteobacteria
Pseudoalteromonas ruthenica S2898 [PNCF]
1685
1775
+
Ser
GGA
[ENA]
¡û
>W2011199762
PNCG01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S2897 [PNCG]
632000
631910
-
Ser
GGA
[ENA]
¡û
>W2011211928
PPSV01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S2756 [PPSV]
198231
198141
-
Ser
GGA
[ENA]
¡û
>W2011571067
SGPG01000022
Gammaproteobacteria
Pseudoalteromonas sp. CO325X [SGPG]
1370
1460
+
Ser
GGA
[ENA]
¡û
>W2110581145
JAGXTQ010000005
Gammaproteobacteria
Pseudoalteromonas sp. BDTF-M6 [JAGXTQ]
187112
187202
+
Ser
GGA
[ENA]
¡û
>W1510021845
BCAI01000009
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
46817
46727
-
Ser
GGA
[ENA]
¡û
>C241025485
CP023396
Gammaproteobacteria
Pseudoalteromonas ruthenica LMG 19699 [CP023396, CP023397]
815115
815205
+
Ser
GGA
-
¡û
>C241096363
CP045418
Gammaproteobacteria
Pseudoalteromonas sp. THAF3 [CP045418]
1943521
1943431
-
Ser
GGA
-
¡û
>W1511518233
JXXY01000002
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
232114
232024
-
Ser
GGA
[ENA]
¡û
>W1511518351
JXXZ01000025
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
38125
38215
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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