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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18548 (86 seq.)
>W1711128533
LUSO01000001
Bacillota
Clostridium baratii [LUSO]
199390
199300
-
Ser
GCT
[ENA]
¡û
>W1711293903
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
89761
89851
+
Ser
GCT
[ENA]
¡û
>W1711293974
LZZA01000063
Bacillota
Clostridium saccharobutylicum [LZZA]
5276
5366
+
Ser
GCT
[ENA]
¡û
>W1711293976
LZZA01000063
Bacillota
Clostridium saccharobutylicum [LZZA]
6012
6102
+
Ser
GCT
[ENA]
¡û
>W1711294561
LZZM01000231
Bacillota
Clostridium puniceum [LZZM]
288
378
+
Ser
GCT
[ENA]
¡û
>W1711462087
MJHL01000027
Bacillota
Clostridium baratii [MJHL]
10011
10101
+
Ser
GCT
[ENA]
¡û
>W1711462153
MJHM01000023
Bacillota
Clostridium baratii [MJHM]
199212
199122
-
Ser
GCT
[ENA]
¡û
>C171045555
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
19568
19658
+
Ser
GCT
-
¡û
>C171045557
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
20303
20393
+
Ser
GCT
-
¡û
>C171045706
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
19568
19658
+
Ser
GCT
-
¡û
>C171045708
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
20303
20393
+
Ser
GCT
-
¡û
>C171045875
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
19569
19659
+
Ser
GCT
-
¡û
>C171045877
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
20304
20394
+
Ser
GCT
-
¡û
>C171131103
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
28611
28701
+
Ser
GCT
-
¡û
>W131195003
ASRV01000092
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
79582
79492
-
Ser
GCT
[ENA]
¡û
>WENV180098876
MTBK01272579
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1362
1272
-
Ser
GCT
[ENA]
¢þ
>WENV180180640
OAWL01000132
[OAWL] human gut metagenome; faeces
16231
16141
-
Ser
GCT
[ENA]
¢þ
>WENV180275825
OBHU01000411
[OBHU] human gut metagenome; feces
8060
8150
+
Ser
GCT
[ENA]
¢þ
>WENV180429189
OBWC01040851
[OBWC] human gut metagenome; faeces
1
91
+
Ser
GCT
[ENA]
¢þ
>WENV180445112
OBXA01001552
[OBXA] human gut metagenome; faeces
5440
5350
-
Ser
GCT
[ENA]
¢þ
>WENV180476899
OBYZ01000044
[OBYZ] human gut metagenome; faeces
8083
8173
+
Ser
GCT
[ENA]
¢þ
>WENV180482637
OBZG01002689
[OBZG] human gut metagenome; faeces
910
1000
+
Ser
GCT
[ENA]
¢þ
>WENV180489186
OBZR01030882
[OBZR] human gut metagenome; faeces
170
80
-
Ser
GCT
[ENA]
¢þ
>WENV180528755
OCHJ01019326
[OCHJ] human gut metagenome; human gut
983
893
-
Ser
GCT
[ENA]
¢þ
>W141063552
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
77812
77722
-
Ser
GCT
[ENA]
¡û
>W141063554
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
76524
76434
-
Ser
GCT
[ENA]
¡û
>WENV180760956
ODHZ01003175
[ODHZ] human metagenome; G_DNA_Stool
10817
10727
-
Ser
GCT
[ENA]
¢þ
>WENV181699061
OGPF01008297
[OGPF] human gut metagenome; faeces
156
246
+
Ser
GCT
[ENA]
¢þ
>WENV181800482
OGRY01036230
[OGRY] human gut metagenome; faeces
1233
1143
-
Ser
GCT
[ENA]
¢þ
>WENV181805831
OGSJ01000690
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
16218
16128
-
Ser
GCT
[ENA]
¢þ
>WENV181807869
OGSQ01000473
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
14225
14135
-
Ser
GCT
[ENA]
¢þ
>WENV181809596
OGST01000592
[OGST] human gut metagenome; fecal sample 7 from infant 6
586
676
+
Ser
GCT
[ENA]
¢þ
>WENV181814924
OGTH01002343
[OGTH] human gut metagenome; fecal sample 4 from infant 6
217
127
-
Ser
GCT
[ENA]
¢þ
>WENV181826144
OGUL01006215
[OGUL] human gut metagenome; faeces
469
379
-
Ser
GCT
[ENA]
¢þ
>WENV181876616
OGXC01044508
[OGXC] human gut metagenome; faeces
432
342
-
Ser
GCT
[ENA]
¢þ
>WENV182405906
OIEX01000009
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
4940
5030
+
Ser
GCT
[ENA]
¢þ
>WENV182721157
OJPO01001951
[OJPO] human gut metagenome; stool sample
2977
2887
-
Ser
GCT
[ENA]
¢þ
>WENV182816581
OJZB01000450
[OJZB] human gut metagenome; human gut
1936
2026
+
Ser
GCT
[ENA]
¢þ
>WENV182838171
OKGO01001018
[OKGO] human gut metagenome; human gut
606
516
-
Ser
GCT
[ENA]
¢þ
>WENV182844267
OKIR01000266
[OKIR] human gut metagenome; human gut
4269
4359
+
Ser
GCT
[ENA]
¢þ
>WENV182862812
OKPP01005019
[OKPP] human gut metagenome; human gut
1286
1196
-
Ser
GCT
[ENA]
¢þ
>WENV182863543
OKPT01002147
[OKPT] human gut metagenome; human gut
126
36
-
Ser
GCT
[ENA]
¢þ
>WENV182874633
OKRW01018932
[OKRW] human gut metagenome; faeces
1047
957
-
Ser
GCT
[ENA]
¢þ
>WENV182950262
OKVR01001441
[OKVR] human gut metagenome; human gut
1995
2085
+
Ser
GCT
[ENA]
¢þ
>WENV182952137
OKVV01004893
[OKVV] human gut metagenome; human gut
523
613
+
Ser
GCT
[ENA]
¢þ
>WENV182963282
OKWQ01000048
[OKWQ] human gut metagenome; stool
5197
5287
+
Ser
GCT
[ENA]
¢þ
>WENV183113039
OLNP01004657
[OLNP] human gut metagenome; faeces
908
818
-
Ser
GCT
[ENA]
¢þ
>WENV183114068
OLNP01101584
[OLNP] human gut metagenome; faeces
350
440
+
Ser
GCT
[ENA]
¢þ
>WENV183128176
OLNZ01002844
[OLNZ] human gut metagenome; faeces
8288
8198
-
Ser
GCT
[ENA]
¢þ
>WENV183132079
OLOB01000406
[OLOB] human gut metagenome; faeces
9649
9739
+
Ser
GCT
[ENA]
¢þ
>WENV183146923
OLOM01036113
[OLOM] human gut metagenome; faeces
7
97
+
Ser
GCT
[ENA]
¢þ
>WENV183148081
OLON01009987
[OLON] human gut metagenome; faeces
219
309
+
Ser
GCT
[ENA]
¢þ
>WENV183234023
OLQV01009250
[OLQV] human gut metagenome; faeces
4140
4050
-
Ser
GCT
[ENA]
¢þ
>WENV183261091
OLRP01007538
[OLRP] human gut metagenome; faeces
3169
3079
-
Ser
GCT
[ENA]
¢þ
>WENV183327688
OLWA01001470
[OLWA] human gut metagenome; faeces
24220
24130
-
Ser
GCT
[ENA]
¢þ
>C181031953
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
28201
28291
+
Ser
GCT
-
¡û
>C181136090
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
18445
18535
+
Ser
GCT
-
¡û
>C181176699
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1006691
1006781
+
Ser
GCT
-
¡û
>C191106390
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
25344
25434
+
Ser
GCT
-
¡û
>C191123788
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
543946
544036
+
Ser
GCT
-
¡û
>W09118965
ACDK01000082
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
5119
5209
+
Ser
GCT
[ENA]
¡û
>C191222046
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
20281
20371
+
Ser
GCT
-
¡û
>W141820411
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1214562
1214652
+
Ser
GCT
[ENA]
¡û
>C141007567
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
19568
19658
+
Ser
GCT
[Ensembl]
¡û
>C141007569
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
20303
20393
+
Ser
GCT
[Ensembl]
¡û
>W1910498557
FXWX01000024
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
10296
10386
+
Ser
GCT
[ENA]
¡û
>W1911491435
OAOE01000031
Bacillota
Clostridium tertium [OAOE]
33244
33154
-
Ser
GCT
[ENA]
¡û
>W1911493932
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
225311
225221
-
Ser
GCT
[ENA]
¡û
>SRA1005129
SRR006907.52321
metagenomic water samples (SRP000427)
181
271
+
Ser
GCT
[SRA]
>W1810604957
QGMU01000025
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
30182
30092
-
Ser
GCT
[ENA]
¡û
>W1810605029
QGMV01000017
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
5285
5375
+
Ser
GCT
[ENA]
¡û
>W1610030609
AYXL01000137
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
5049
5139
+
Ser
GCT
[ENA]
¡û
>W1610103156
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
9870
9960
+
Ser
GCT
[ENA]
¡û
>W1610501251
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
17632
17722
+
Ser
GCT
[ENA]
¡û
>W1610616886
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178664
178574
-
Ser
GCT
[ENA]
¡û
>WENV086453
BABF01004643
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
1
91
+
Ser
GCT
[ENA]
>W1710027732
AYXL01000137
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
5049
5139
+
Ser
GCT
[ENA]
¡û
>W1710105911
CZAV01000005
Bacillota
Clostridium baratii [CZAV]
9870
9960
+
Ser
GCT
[ENA]
¡û
>W1710494721
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
17632
17722
+
Ser
GCT
[ENA]
¡û
>W1710499989
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
354
264
-
Ser
GCT
[ENA]
¡û
>W1710587168
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
137458
137368
-
Ser
GCT
[ENA]
¡û
>W1710587170
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
136171
136081
-
Ser
GCT
[ENA]
¡û
>W1710588083
FQZB01000018
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
3628
3718
+
Ser
GCT
[ENA]
¡û
>W1710588105
FQZB01000033
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
7843
7933
+
Ser
GCT
[ENA]
¡û
>W1710589432
FRAD01000030
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
10211
10121
-
Ser
GCT
[ENA]
¡û
>W1710742225
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178664
178574
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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