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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185506 (5 seq.)
>WENV181367886
OFQD01004246
[OFQD] freshwater metagenome; Freshwater Lake
494
569
+
Glu
CTC
[ENA]
¡û
>WENV181395429
OFSA01000020
[OFSA] freshwater metagenome; Freshwater Lake
9888
9813
-
Glu
CTC
[ENA]
¡û
>C151014516
CP006913
Unclassified
candidate division SR1 bacterium RAAC1_SR1_1 [CP006913]
1079790
1079715
-
Glu
CTC
-
¡û
>SRA1025447
SRR035085.8591
454 Sequencing (SRP001806)
240
315
+
Glu
CTC
[SRA]
>W2110410326
JAEHHG010000017
Unclassified
Candidatus Gracilibacteria bacterium S5_H10 [JAEHHG]
10238
10311
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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