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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185518 (19 seq.)
>WENV180748500
ODHN01237974
[ODHN] human metagenome; G_DNA_Stool
162
236
+
Val
TAC
[ENA]
¢þ
>WENV181196214
OEQW01010677
[OEQW] metagenome; Caecal content
161
85
-
Val
TAC
[ENA]
¢þ
>WENV181359913
OFMX01001680
[OFMX] human gut metagenome; human gut
15265
15189
-
Val
TAC
[ENA]
¢þ
>WENV181750530
OGQP01006152
[OGQP] human gut metagenome; faeces
3052
3128
+
Val
TAC
[ENA]
¢þ
>WENV181895513
OGXR01012262
[OGXR] human gut metagenome; faeces
146
70
-
Val
TAC
[ENA]
¢þ
>WENV182052691
OHEH01028248
[OHEH] human gut metagenome; feces
99
23
-
Val
TAC
[ENA]
¢þ
>WENV182166441
OHMP01012465
[OHMP] human gut metagenome; feces
1351
1427
+
Val
TAC
[ENA]
¢þ
>WENV183398420
OLZO01002015
[OLZO] human gut metagenome; feces
5007
5083
+
Val
TAC
[ENA]
¢þ
>WENV183455049
OMDG01000719
[OMDG] human gut metagenome; feces
2344
2420
+
Val
TAC
[ENA]
¢þ
>WENV183655733
OQWD01065030
[OQWD] human gut metagenome; human gut
364
440
+
Val
TAC
[ENA]
¢þ
>WENV170675150
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
730
654
-
Val
TAC
[ENA]
¢þ
>C181115557
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2276687
2276763
+
Val
TAC
-
¡û
>C191031560
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2241815
2241891
+
Val
TAC
-
¡û
>C191031615
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2364855
2364931
+
Val
TAC
-
¡û
>C191072226
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2276683
2276759
+
Val
TAC
-
¡û
>W10115293
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
63536
63612
+
Val
TAC
[ENA]
¡û
>C11108753
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2276684
2276760
+
Val
TAC
[Ensembl]
¡û
>W11118879
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
63536
63612
+
Val
TAC
[ENA]
¡û
>W1710565701
FORK01000013
Bacillota
Ruminococcaceae bacterium D5 [FORK]
95671
95747
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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