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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185724 (114 seq.)
>W1710836206
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
869388
869472
+
Tyr
GTA
[ENA]
¡û
>W1710914156
LNTC01000140
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
714
630
-
Tyr
GTA
[ENA]
¡û
>W1710914159
LNTC01000163
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
1577
1661
+
Tyr
GTA
[ENA]
¡û
>W1711055294
LRUQ01000080
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
50249
50165
-
Tyr
GTA
[ENA]
¡û
>WENV180283658
OBID01001417
[OBID] metagenome; sludge
4567
4483
-
Tyr
GTA
[ENA]
¢þ
>WENV181373450
OFQX01065327
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
541
457
-
Tyr
GTA
[ENA]
¢þ
>W141274750
JABW01000015
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
9549
9633
+
Tyr
GTA
[ENA]
¡û
>W141274766
JABW01000024
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
107368
107284
-
Tyr
GTA
[ENA]
¡û
>W141289866
JARS01000021
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
92388
92472
+
Tyr
GTA
[ENA]
¡û
>W141289895
JARS01000027
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
22038
22122
+
Tyr
GTA
[ENA]
¡û
>W141289918
JART01000019
Campylobacterota
Arcobacter sp. AF1028 [JART]
92382
92466
+
Tyr
GTA
[ENA]
¡û
>W141289947
JART01000024
Campylobacterota
Arcobacter sp. AF1028 [JART]
22038
22122
+
Tyr
GTA
[ENA]
¡û
>W141289977
JARU01000011
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
10838
10922
+
Tyr
GTA
[ENA]
¡û
>W141289992
JARU01000015
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
55378
55294
-
Tyr
GTA
[ENA]
¡û
>W141290035
JARV01000010
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
10778
10862
+
Tyr
GTA
[ENA]
¡û
>W141290051
JARV01000012
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
82594
82510
-
Tyr
GTA
[ENA]
¡û
>W141291662
JATO01000014
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
10444
10528
+
Tyr
GTA
[ENA]
¡û
>W141291675
JATO01000018
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
54100
54016
-
Tyr
GTA
[ENA]
¡û
>WENV170656017
JTFN01115708
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
434
350
-
Tyr
GTA
[ENA]
¢þ
>WENV170690838
LFRM01364862
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2354
2438
+
Tyr
GTA
[ENA]
¢þ
>WENV170722719
LSQX01240695
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2933
3017
+
Tyr
GTA
[ENA]
¢þ
>C181199816
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1505586
1505502
-
Tyr
GTA
-
¡û
>C181199822
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
424054
423970
-
Tyr
GTA
-
¡û
>C191084531
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
458813
458897
+
Tyr
GTA
-
¡û
>C191084569
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
570742
570658
-
Tyr
GTA
-
¡û
>C191084582
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
1758322
1758406
+
Tyr
GTA
-
¡û
>C191084596
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2244483
2244399
-
Tyr
GTA
-
¡û
>C191095019
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
446206
446290
+
Tyr
GTA
-
¡û
>C191095047
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1561946
1562030
+
Tyr
GTA
-
¡û
>C191095069
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
440615
440699
+
Tyr
GTA
-
¡û
>C191095093
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1604459
1604543
+
Tyr
GTA
-
¡û
>C191122812
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
428361
428445
+
Tyr
GTA
-
¡û
>C191122846
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
533055
532971
-
Tyr
GTA
-
¡û
>C191147105
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1492079
1491995
-
Tyr
GTA
-
¡û
>C191149077
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1488546
1488630
+
Tyr
GTA
-
¡û
>C191149086
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1579541
1579457
-
Tyr
GTA
-
¡û
>W1910810869
MUXE01000015
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
44084
44000
-
Tyr
GTA
[ENA]
¡û
>W1910810877
MUXE01000020
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
16259
16343
+
Tyr
GTA
[ENA]
¡û
>W1911200224
NREO01000010
Campylobacterota
Arcobacter suis CECT7833 [NREO]
17387
17471
+
Tyr
GTA
[ENA]
¡û
>W1911200246
NREO01000022
Campylobacterota
Arcobacter suis CECT7833 [NREO]
21221
21305
+
Tyr
GTA
[ENA]
¡û
>W1911424337
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
496556
496472
-
Tyr
GTA
[ENA]
¡û
>W1911424346
NXGC01000004
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
140997
141081
+
Tyr
GTA
[ENA]
¡û
>W1911424378
NXGD01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
63516
63432
-
Tyr
GTA
[ENA]
¡û
>W1911424392
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
17543
17459
-
Tyr
GTA
[ENA]
¡û
>W1911424415
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
284153
284237
+
Tyr
GTA
[ENA]
¡û
>W1911424434
NXGE01000005
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
79576
79660
+
Tyr
GTA
[ENA]
¡û
>W1911424548
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
9777
9693
-
Tyr
GTA
[ENA]
¡û
>W1911424555
NXGH01000008
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
29330
29246
-
Tyr
GTA
[ENA]
¡û
>W1911424589
NXGI01000004
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
71202
71286
+
Tyr
GTA
[ENA]
¡û
>W1911424608
NXGI01000056
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
126094
126178
+
Tyr
GTA
[ENA]
¡û
>W1911424631
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
375456
375372
-
Tyr
GTA
[ENA]
¡û
>W1911424638
NXGJ01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
24931
24847
-
Tyr
GTA
[ENA]
¡û
>W1911424660
NXGK01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
90762
90846
+
Tyr
GTA
[ENA]
¡û
>W1911424686
NXGK01000036
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
7516
7600
+
Tyr
GTA
[ENA]
¡û
>W1911426127
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
124014
124098
+
Tyr
GTA
[ENA]
¡û
>W1911426137
NXIC01000001
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
235943
235859
-
Tyr
GTA
[ENA]
¡û
>W1911576053
PDJS01000001
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
235279
235195
-
Tyr
GTA
[ENA]
¡û
>W1911576071
PDJS01000007
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
68058
67974
-
Tyr
GTA
[ENA]
¡û
>W1911576089
PDJT01000004
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
67160
67244
+
Tyr
GTA
[ENA]
¡û
>W1911576101
PDJT01000015
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
15952
15868
-
Tyr
GTA
[ENA]
¡û
>W1911576435
PDKB01000003
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
81916
82000
+
Tyr
GTA
[ENA]
¡û
>W1911576449
PDKB01000009
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
90261
90177
-
Tyr
GTA
[ENA]
¡û
>W1911576523
PDKD01000001
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
82301
82385
+
Tyr
GTA
[ENA]
¡û
>W1911576540
PDKD01000006
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
42260
42344
+
Tyr
GTA
[ENA]
¡û
>W1911576694
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
121620
121704
+
Tyr
GTA
[ENA]
¡û
>W1911576704
PDKH01000001
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
225140
225056
-
Tyr
GTA
[ENA]
¡û
>W1911576752
PDKI01000002
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
150994
150910
-
Tyr
GTA
[ENA]
¡û
>W1911576758
PDKI01000009
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
16196
16280
+
Tyr
GTA
[ENA]
¡û
>W1911748912
QWFD01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
111006
110922
-
Tyr
GTA
[ENA]
¡û
>W1911748930
QWFD01000005
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
122763
122847
+
Tyr
GTA
[ENA]
¡û
>W1911748954
QWFE01000001
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
111006
110922
-
Tyr
GTA
[ENA]
¡û
>W1911748972
QWFE01000005
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
122763
122847
+
Tyr
GTA
[ENA]
¡û
>W1810058596
PDKA01000005
Campylobacterota
Arcobacter sp. FW59 [PDKA]
67814
67730
-
Tyr
GTA
[ENA]
¡û
>W1810058601
PDKA01000006
Campylobacterota
Arcobacter sp. FW59 [PDKA]
17304
17388
+
Tyr
GTA
[ENA]
¡û
>W1810584086
QEYG01000001
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
20797
20881
+
Tyr
GTA
[ENA]
¡û
>W1810584106
QEYG01000034
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
880
796
-
Tyr
GTA
[ENA]
¡û
>W1810584134
QEYH01000001
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
453511
453595
+
Tyr
GTA
[ENA]
¡û
>W1810584152
QEYH01000005
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
122763
122847
+
Tyr
GTA
[ENA]
¡û
>W1810584176
QEYI01000001
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
100506
100422
-
Tyr
GTA
[ENA]
¡û
>W1810584194
QEYI01000004
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
128947
129031
+
Tyr
GTA
[ENA]
¡û
>W1610584451
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
95627
95711
+
Tyr
GTA
[ENA]
¡û
>W1610584460
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
175133
175049
-
Tyr
GTA
[ENA]
¡û
>W1610584488
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
112344
112428
+
Tyr
GTA
[ENA]
¡û
>W1610584495
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
191850
191766
-
Tyr
GTA
[ENA]
¡û
>W1610584906
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
8033
8117
+
Tyr
GTA
[ENA]
¡û
>W1610584913
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
99028
98944
-
Tyr
GTA
[ENA]
¡û
>W1610584968
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
45467
45551
+
Tyr
GTA
[ENA]
¡û
>W1610584972
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
125941
125857
-
Tyr
GTA
[ENA]
¡û
>W1610584995
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
46946
47030
+
Tyr
GTA
[ENA]
¡û
>W1610585002
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
147803
147719
-
Tyr
GTA
[ENA]
¡û
>W1610585039
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
341316
341400
+
Tyr
GTA
[ENA]
¡û
>W1610585045
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
427865
427781
-
Tyr
GTA
[ENA]
¡û
>W1610586352
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
330264
330348
+
Tyr
GTA
[ENA]
¡û
>W1610586384
LDIR01000005
Campylobacterota
Arcobacter porcinus [LDIR]
45089
45173
+
Tyr
GTA
[ENA]
¡û
>W1610586394
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
378719
378803
+
Tyr
GTA
[ENA]
¡û
>W1610586402
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
463765
463681
-
Tyr
GTA
[ENA]
¡û
>W1610699345
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
869388
869472
+
Tyr
GTA
[ENA]
¡û
>W1610896340
LRUQ01000080
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
50249
50165
-
Tyr
GTA
[ENA]
¡û
>W1710703668
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
95627
95711
+
Tyr
GTA
[ENA]
¡û
>W1710703677
LCSK01000002
Campylobacterota
Arcobacter porcinus [LCSK]
175133
175049
-
Tyr
GTA
[ENA]
¡û
>W1710703705
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
112344
112428
+
Tyr
GTA
[ENA]
¡û
>W1710703712
LCSL01000003
Campylobacterota
Arcobacter porcinus [LCSL]
191850
191766
-
Tyr
GTA
[ENA]
¡û
>W1710704097
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
8033
8117
+
Tyr
GTA
[ENA]
¡û
>W1710704104
LCUH01000003
Campylobacterota
Aliarcobacter thereius [LCUH]
99028
98944
-
Tyr
GTA
[ENA]
¡û
>W1710704159
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
45467
45551
+
Tyr
GTA
[ENA]
¡û
>W1710704163
LCUI01000006
Campylobacterota
Arcobacter porcinus [LCUI]
125941
125857
-
Tyr
GTA
[ENA]
¡û
>W1710704186
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
46946
47030
+
Tyr
GTA
[ENA]
¡û
>W1710704193
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
147803
147719
-
Tyr
GTA
[ENA]
¡û
>W1710704230
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
341316
341400
+
Tyr
GTA
[ENA]
¡û
>W1710704236
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
427865
427781
-
Tyr
GTA
[ENA]
¡û
>W1710705482
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
330264
330348
+
Tyr
GTA
[ENA]
¡û
>W1710705514
LDIR01000005
Campylobacterota
Arcobacter porcinus [LDIR]
45089
45173
+
Tyr
GTA
[ENA]
¡û
>W1710705524
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
378719
378803
+
Tyr
GTA
[ENA]
¡û
>W1710705532
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
463765
463681
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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