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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185724 (6 seq.)
>W2110429365
JAEMUD010000001
Chlamydiota
Parachlamydia sp. AcF125 [JAEMUD]
1067004
1067089
+
Leu
TAA
[ENA]
¡û
>W10107306
ACZE01000038
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
85847
85762
-
Leu
TAA
[ENA]
¡û
>W1510004668
BAWW01000066
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
9509
9425
-
Leu
TAA
[ENA]
¡û
>W11109595
ACZE01000038
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
85847
85762
-
Leu
TAA
[ENA]
¡û
>C11116405
FR872580
Chlamydiota
Parachlamydia acanthamoebae UV-7 [FR872580]
676683
676767
+
Leu
TAA
[Ensembl]
¡û
>W1511360543
JSAM01000010
Chlamydiota
Parachlamydia acanthamoebae OEW1 [JSAM]
7837
7921
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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