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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186380 (9 seq.)
>WENV180970186
ODUU01001758
[ODUU] human metagenome; G_DNA_Stool
9398
9474
+
Ile
GAT
[ENA]
¡û
>WENV181134286
OEGF01053479
[OEGF] human metagenome; G_DNA_Stool
114
38
-
Ile
GAT
[ENA]
¡û
>WENV181196469
OEQY01000012
[OEQY] metagenome; Caecal content
135424
135500
+
Ile
GAT
[ENA]
¡û
>WENV181621926
OGMF01021740
[OGMF] metagenome; Human gut stool
2314
2238
-
Ile
GAT
[ENA]
¡û
>WENV182663528
OJMO01015612
[OJMO] human gut metagenome; feces
1730
1654
-
Ile
GAT
[ENA]
¡û
>WENV183176332
OLPF01005273
[OLPF] human gut metagenome; faeces
4975
4899
-
Ile
GAT
[ENA]
¡û
>WENV183354388
OLXC01000130
[OLXC] human gut metagenome; feces
7797
7721
-
Ile
GAT
[ENA]
¡û
>WENV183357716
OLXG01000441
[OLXG] human gut metagenome; feces
8878
8954
+
Ile
GAT
[ENA]
¡û
>WENV183518145
OMNQ01000104
[OMNQ] human gut metagenome; feces
7872
7796
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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