This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186428 (35 seq.)
>W131225499
AUDQ01000002
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
281055
281130
+
Arg
TCT
[ENA]
¡û
>C171035277
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
387187
387112
-
Arg
TCT
-
¡û
>C171035518
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
541182
541107
-
Arg
TCT
-
¡û
>C171035586
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
522024
521949
-
Arg
TCT
-
¡û
>C171037747
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
481604
481527
-
Arg
TCT
-
¡û
>C171037814
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
452250
452175
-
Arg
TCT
-
¡û
>WENV181641235
OGNF01002202
[OGNF] metagenome; Human gut stool
4873
4949
+
Arg
TCT
[ENA]
¡û
>WENV181788891
OGRO01004996
[OGRO] human gut metagenome; faeces
4031
4107
+
Arg
TCT
[ENA]
¡û
>W141215199
AZUC01000014
Bacillota
Sporosarcina sp. D27 [AZUC]
41946
42021
+
Arg
TCT
[ENA]
¡û
>WENV182638727
OJLA01022331
[OJLA] metagenome; faeces
280
204
-
Arg
TCT
[ENA]
¡û
>WENV182660032
OJMM01000006
[OJMM] human gut metagenome; feces
118710
118786
+
Arg
TCT
[ENA]
¡û
>WENV182662877
OJMO01000620
[OJMO] human gut metagenome; feces
12937
13013
+
Arg
TCT
[ENA]
¡û
>WENV170084073
CEAB01001765
[CEAB] gut metagenome; human stools
5474
5398
-
Arg
TCT
[ENA]
¡û
>W1810066841
PDYK01000003
Bacillota
Sporosarcina sp. P10 [PDYK]
53819
53744
-
Arg
TCT
[ENA]
¡û
>W1810066978
PDYM01000045
Bacillota
Sporosarcina sp. P13 [PDYM]
4859
4934
+
Arg
TCT
[ENA]
¡û
>W1810067000
PDYN01000004
Bacillota
Sporosarcina sp. P16a [PDYN]
103513
103588
+
Arg
TCT
[ENA]
¡û
>W1810067053
PDYO01000004
Bacillota
Sporosarcina sp. P16b [PDYO]
8184
8259
+
Arg
TCT
[ENA]
¡û
>W1810067167
PDYQ01000001
Bacillota
Sporosarcina sp. P18a [PDYQ]
326595
326670
+
Arg
TCT
[ENA]
¡û
>W1810067212
PDYR01000002
Bacillota
Sporosarcina sp. P19 [PDYR]
191628
191703
+
Arg
TCT
[ENA]
¡û
>W1810067265
PDYS01000003
Bacillota
Sporosarcina sp. P1 [PDYS]
103233
103308
+
Arg
TCT
[ENA]
¡û
>W1810067310
PDYT01000002
Bacillota
Sporosarcina sp. P20a [PDYT]
313204
313129
-
Arg
TCT
[ENA]
¡û
>W1810067420
PDYV01000004
Bacillota
Sporosarcina sp. P25 [PDYV]
103513
103588
+
Arg
TCT
[ENA]
¡û
>W1810067477
PDYW01000001
Bacillota
Sporosarcina sp. P26b [PDYW]
349919
349995
+
Arg
TCT
[ENA]
¡û
>W1810067520
PDYX01000001
Bacillota
Sporosarcina sp. P29 [PDYX]
60598
60523
-
Arg
TCT
[ENA]
¡û
>W1810067578
PDYY01000001
Bacillota
Sporosarcina sp. P2 [PDYY]
167858
167933
+
Arg
TCT
[ENA]
¡û
>W1810067688
PDZA01000001
Bacillota
Sporosarcina sp. P31 [PDZA]
274570
274645
+
Arg
TCT
[ENA]
¡û
>W1810067746
PDZB01000003
Bacillota
Sporosarcina sp. P32b [PDZB]
168943
169018
+
Arg
TCT
[ENA]
¡û
>W1810067918
PDZE01000006
Bacillota
Sporosarcina sp. P3 [PDZE]
164378
164303
-
Arg
TCT
[ENA]
¡û
>W1810067971
PDZF01000005
Bacillota
Sporosarcina sp. P7 [PDZF]
164587
164662
+
Arg
TCT
[ENA]
¡û
>W2011955027
UYIR01000041
Bacillota
Lysinibacillus sphaericus NCTC11025 [UYIR]
1820
1745
-
Arg
TCT
[ENA]
¡û
>W2012331000
WHVV01000004
Bacillota
Sporosarcina sp. A4 [WHVV]
147017
146942
-
Arg
TCT
[ENA]
¡û
>W2110260585
JACSQN010000001
Bacillota
Sporosarcina sp. Sa2YVA2 [JACSQN]
28148
28223
+
Arg
TCT
[ENA]
¡û
>W2110261116
JACSQY010000003
Bacillota
Sporosarcina sp. Sa3CUA8 [JACSQY]
284367
284442
+
Arg
TCT
[ENA]
¡û
>C241262841
CP125968
Bacillota
Sporosarcina thermotolerans CCUG 53480 [CP125968]
2824815
2824740
-
Arg
TCT
-
¡û
>W1511479284
JWIB01000019
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
100765
100690
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK