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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18694 (25 seq.)
>W1711765768
MUXV01000005
Gammaproteobacteria
Moraxella bovis [MUXV]
4304
4214
-
Ser
TGA
[ENA]
¡û
>W1711799939
MXAP01000047
Gammaproteobacteria
Moraxella equi [MXAP]
47650
47560
-
Ser
TGA
[ENA]
¡û
>W131228786
AUGF01000054
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
5587
5497
-
Ser
TGA
[ENA]
¡û
>WENV180006968
FLRZ01047627
[FLRZ] metagenome; saliva
198
108
-
Ser
TGA
[ENA]
¢þ
>WENV180006969
FLRZ01047627
[FLRZ] metagenome; saliva
93
3
-
Ser
TGA
[ENA]
¢þ
>W141055125
AOMT01000022
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
143549
143639
+
Ser
TGA
[ENA]
¡û
>W141055126
AOMT01000022
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
143679
143769
+
Ser
TGA
[ENA]
¡û
>WENV181114266
OEEO01000290
[OEEO] human metagenome; G_DNA_Supragingival plaque
9869
9779
-
Ser
TGA
[ENA]
¢þ
>WENV181199509
OERH01003365
[OERH] metagenome; water of meat washing
1696
1786
+
Ser
TGA
[ENA]
¢þ
>C181190872
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
695124
695214
+
Ser
TGA
-
¡û
>C191008771
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
623802
623892
+
Ser
TGA
-
¡û
>C191008772
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
623932
624022
+
Ser
TGA
-
¡û
>W1910977031
NKHK01000033
Gammaproteobacteria
Moraxella sp. VT-16-12 [NKHK]
74435
74525
+
Ser
TGA
[ENA]
¡û
>C161034442
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
627855
627945
+
Ser
TGA
[Ensembl]
¡û
>C161034443
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
627985
628075
+
Ser
TGA
[Ensembl]
¡û
>C161034496
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
794541
794631
+
Ser
TGA
-
¡û
>C161034497
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
794671
794761
+
Ser
TGA
-
¡û
>C161034565
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1483804
1483714
-
Ser
TGA
-
¡û
>C161034566
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1483674
1483584
-
Ser
TGA
-
¡û
>C161034614
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1591228
1591138
-
Ser
TGA
[Ensembl]
¡û
>C161034615
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1591098
1591008
-
Ser
TGA
[Ensembl]
¡û
>C161034665
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1514269
1514179
-
Ser
TGA
-
¡û
>C161034666
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1514139
1514049
-
Ser
TGA
-
¡û
>C161034693
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
611134
611224
+
Ser
TGA
-
¡û
>C161034694
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
611264
611354
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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